cassava4566.m1 (Manihot esculenta)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 cassava4566.m1 T13449_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava4566.m1 CCHC ZF 79 96

Links

Other CCHC ZF family RBPs
Other Manihot esculenta RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
POPTR_0001s18350 Populus trichocarpa POPTR_0001s18350 N 0.833
MDP0000549016 Malus x domestica MDP0000549016 N 0.833
POPTR_0011s03010 Populus trichocarpa POPTR_0011s03010 N 0.833
POPTR_0019s05880 Populus trichocarpa POPTR_0019s05880 N 0.833
MDP0000712562 Malus x domestica MDP0000712562 N 0.778
MDP0000701448 Malus x domestica MDP0000701448 N 0.778
MDP0000919408 Malus x domestica MDP0000919408 N 0.778
MDP0000640504 Malus x domestica MDP0000640504 N 0.778
MDP0000740123 Malus x domestica MDP0000740123 N 0.778
MDP0000593278 Malus x domestica MDP0000593278 N 0.778
MDP0000487820 Malus x domestica MDP0000487820 N 0.778
MDP0000453200 Malus x domestica MDP0000453200 N 0.778
MDP0000390251 Malus x domestica MDP0000390251 N 0.778
cassava46035.m1 Manihot esculenta cassava46035.m1 N 0.778
MDP0000506096 Malus x domestica MDP0000506096 N 0.778
MDP0000566255 Malus x domestica MDP0000566255 N 0.778
MDP0000541906 Malus x domestica MDP0000541906 N 0.778
MDP0000567895 Malus x domestica MDP0000567895 N 0.778
POPTR_0006s13220 Populus trichocarpa POPTR_0006s13220 N 0.722