POPTR_0011s03010 (Populus trichocarpa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 POPTR_0011s03010 T12734_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0011s03010.1 CCHC ZF 139 156

Links

Other CCHC ZF family RBPs
Other Populus trichocarpa RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava4566.m1 Manihot esculenta cassava4566.m1 N 0.833
POPTR_0019s05880 Populus trichocarpa POPTR_0019s05880 N 0.778
POPTR_0001s18350 Populus trichocarpa POPTR_0001s18350 N 0.778
POPTR_0006s13220 Populus trichocarpa POPTR_0006s13220 N 0.778
MDP0000549016 Malus x domestica MDP0000549016 N 0.778
MDP0000701448 Malus x domestica MDP0000701448 N 0.722
MDP0000919408 Malus x domestica MDP0000919408 N 0.722
MDP0000640504 Malus x domestica MDP0000640504 N 0.722
MDP0000740123 Malus x domestica MDP0000740123 N 0.722
MDP0000712562 Malus x domestica MDP0000712562 N 0.722
MDP0000566255 Malus x domestica MDP0000566255 N 0.722
MDP0000453200 Malus x domestica MDP0000453200 N 0.722
MDP0000390251 Malus x domestica MDP0000390251 N 0.722
MDP0000487820 Malus x domestica MDP0000487820 N 0.722
MDP0000506096 Malus x domestica MDP0000506096 N 0.722
MDP0000541906 Malus x domestica MDP0000541906 N 0.722
MDP0000567895 Malus x domestica MDP0000567895 N 0.722