Cucsa.111740 (Cucumis sativus)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 Cucsa.111740 T13489_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.111740.1 CCHC ZF 186 203
Cucsa.111740.1 CCHC ZF 208 225
Cucsa.111740.1 CCHC ZF 227 244
Cucsa.111740.1 CCHC ZF 254 271
Cucsa.111740.1 CCHC ZF 281 292
Cucsa.111740.1 CCHC ZF 304 316
Cucsa.111740.1 CCHC ZF 333 350
Cucsa.111740.1 CCHC ZF 369 386
Cucsa.111740.1 CCHC ZF 405 422
Cucsa.111740.1 CCHC ZF 441 458
Cucsa.111740.2 CCHC ZF 186 203
Cucsa.111740.2 CCHC ZF 208 225
Cucsa.111740.2 CCHC ZF 227 244
Cucsa.111740.2 CCHC ZF 254 271
Cucsa.111740.2 CCHC ZF 281 292
Cucsa.111740.2 CCHC ZF 304 316
Cucsa.111740.2 CCHC ZF 333 350
Cucsa.111740.2 CCHC ZF 369 386
Cucsa.111740.2 CCHC ZF 405 422
Cucsa.111740.3 CCHC ZF 186 203
Cucsa.111740.3 CCHC ZF 208 225
Cucsa.111740.3 CCHC ZF 227 244
Cucsa.111740.3 CCHC ZF 254 271
Cucsa.111740.3 CCHC ZF 281 292
Cucsa.111740.3 CCHC ZF 304 316
Cucsa.111740.3 CCHC ZF 333 350
Cucsa.111740.3 CCHC ZF 369 386
Cucsa.111740.3 CCHC ZF 405 422
Cucsa.111740.4 CCHC ZF 186 203
Cucsa.111740.4 CCHC ZF 208 225
Cucsa.111740.4 CCHC ZF 227 244
Cucsa.111740.4 CCHC ZF 254 271
Cucsa.111740.4 CCHC ZF 281 292
Cucsa.111740.4 CCHC ZF 304 316
Cucsa.111740.4 CCHC ZF 333 350
Cucsa.111740.4 CCHC ZF 369 386
Cucsa.111740.4 CCHC ZF 405 422
Cucsa.111740.5 CCHC ZF 186 203
Cucsa.111740.5 CCHC ZF 208 225
Cucsa.111740.5 CCHC ZF 227 244
Cucsa.111740.5 CCHC ZF 254 271
Cucsa.111740.5 CCHC ZF 281 292
Cucsa.111740.5 CCHC ZF 304 316
Cucsa.111740.5 CCHC ZF 333 350
Cucsa.111740.5 CCHC ZF 369 386
Cucsa.111740.5 CCHC ZF 405 422
Cucsa.111740.6 CCHC ZF 186 203
Cucsa.111740.6 CCHC ZF 208 225
Cucsa.111740.6 CCHC ZF 227 244
Cucsa.111740.6 CCHC ZF 254 271
Cucsa.111740.6 CCHC ZF 281 292
Cucsa.111740.6 CCHC ZF 304 316
Cucsa.111740.6 CCHC ZF 333 350
Cucsa.111740.6 CCHC ZF 369 386
Cucsa.111740.6 CCHC ZF 405 422
Cucsa.111740.7 CCHC ZF 186 203
Cucsa.111740.7 CCHC ZF 208 225
Cucsa.111740.7 CCHC ZF 227 244
Cucsa.111740.7 CCHC ZF 254 271
Cucsa.111740.7 CCHC ZF 280 291
Cucsa.111740.7 CCHC ZF 303 315
Cucsa.111740.7 CCHC ZF 332 349
Cucsa.111740.7 CCHC ZF 368 385
Cucsa.111740.7 CCHC ZF 404 421
Cucsa.111740.8 CCHC ZF 186 203
Cucsa.111740.8 CCHC ZF 208 225
Cucsa.111740.8 CCHC ZF 227 244
Cucsa.111740.8 CCHC ZF 254 271
Cucsa.111740.8 CCHC ZF 281 292
Cucsa.111740.8 CCHC ZF 304 316
Cucsa.111740.8 CCHC ZF 333 350

Links

Other CCHC ZF family RBPs
Other Cucumis sativus RBPs

7 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9HQG5_POPTR Populus trichocarpa POPTR_0009s15750 N 0.712
B9MYP8_POPTR Populus trichocarpa POPTR_0004s20450 N 0.746
Glyma13g15790.1 Glycine max Glyma13g15790.1 N 0.739
Glyma20g11270.1 Glycine max Glyma20g11270.1 N 0.730
mgf008905m Mimulus guttatus mgf008905m N 0.739
ppa016997m Prunus persica ppa016997m N 0.748