fgenesh1_pg.C_scaffold_21000051 (Daphnia pulex)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh1_pg.C_scaffold_21000051 T13841_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_21000051 CCHC ZF 41 58

Links

Other CCHC ZF family RBPs
Other Daphnia pulex RBPs

7 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9GGD6_POPTR Populus trichocarpa POPTR_0001s38150 N 0.000
BGIOSIBCE002155 Oryza indica BGIOSIBCE002155 N 0.000
cassava31871.valid.m1 Manihot esculenta cassava31871.valid.m1 N 0.000
chr4.CM0229.230.nc Lotus japonicus chr4.CM0229.230.nc N 0.000
Cucsa.048210 Cucumis sativus Cucsa.048210 N 0.000
estExt_fgenesh1_pg.C_2810007 Physcomitrella patens estExt_fgenesh1_pg.C_2810007 N 0.000
GSVIVG00021628001 Vitis vinifera GSVIVG00021628001 N 0.000
LOC_Os01g34190 Oryza sativa LOC_Os01g34190 N 0.000
MDP0000162585 Malus x domestica MDP0000162585 N 0.000
ppa007087m Prunus persica ppa007087m N 0.000