fgenesh1_pg.C_scaffold_829000002 (Daphnia pulex)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh1_pg.C_scaffold_829000002 T14056_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_829000002 CCHC ZF 417 434

Links

Other CCHC ZF family RBPs
Other Daphnia pulex RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgenesh1_pg.C_scaffold_140000007 Daphnia pulex fgenesh1_pg.C_scaffold_140000007 N 0.944
fgenesh1_pg.C_scaffold_169000020 Daphnia pulex fgenesh1_pg.C_scaffold_169000020 N 0.778
fgenesh1_pg.C_scaffold_175000012 Daphnia pulex fgenesh1_pg.C_scaffold_175000012 N 0.889
fgenesh1_pg.C_scaffold_195000001 Daphnia pulex fgenesh1_pg.C_scaffold_195000001 N 0.722
fgenesh1_pg.C_scaffold_205000008 Daphnia pulex fgenesh1_pg.C_scaffold_205000008 N 0.944
fgenesh1_pg.C_scaffold_33000112 Daphnia pulex fgenesh1_pg.C_scaffold_33000112 N 0.944
fgenesh1_pg.C_scaffold_386000003 Daphnia pulex fgenesh1_pg.C_scaffold_386000003 N 0.944
fgenesh1_pg.C_scaffold_55000099 Daphnia pulex fgenesh1_pg.C_scaffold_55000099 N 0.889
fgenesh1_pg.C_scaffold_64000087 Daphnia pulex fgenesh1_pg.C_scaffold_64000087 N 0.722
nasonia_NCBI_hmm46134 Nasonia vitripennis nasonia_NCBI_hmm46134 N 0.722
NCBI_GNO_2600182 Daphnia pulex NCBI_GNO_2600182 N 0.722
NCBI_GNO_26900002 Daphnia pulex NCBI_GNO_26900002 N 0.722
NCBI_GNO_456000001 Daphnia pulex NCBI_GNO_456000001 N 0.944
SNAP_00020521 Daphnia pulex SNAP_00020521 N 0.944
SNAP_00026457 Daphnia pulex SNAP_00026457 N 0.889
SNAP_00029977 Daphnia pulex SNAP_00029977 N 0.944
SNAP_00031168 Daphnia pulex SNAP_00031168 N 0.944
SNAP_00037736 Daphnia pulex SNAP_00037736 N 0.944
SNAP_00038773 Daphnia pulex SNAP_00038773 N 0.944