fgenesh1_pg.C_scaffold_205000008 (Daphnia pulex)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh1_pg.C_scaffold_205000008 T13834_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_205000008 CCHC ZF 705 722

Links

Other CCHC ZF family RBPs
Other Daphnia pulex RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SNAP_00029977 Daphnia pulex SNAP_00029977 N 1.000
fgenesh1_pg.C_scaffold_33000112 Daphnia pulex fgenesh1_pg.C_scaffold_33000112 N 1.000
SNAP_00031168 Daphnia pulex SNAP_00031168 N 1.000
SNAP_00037736 Daphnia pulex SNAP_00037736 N 1.000
fgenesh1_pg.C_scaffold_140000007 Daphnia pulex fgenesh1_pg.C_scaffold_140000007 N 1.000
SNAP_00038773 Daphnia pulex SNAP_00038773 N 1.000
NCBI_GNO_456000001 Daphnia pulex NCBI_GNO_456000001 N 1.000
SNAP_00020521 Daphnia pulex SNAP_00020521 N 1.000
fgenesh1_pg.C_scaffold_386000003 Daphnia pulex fgenesh1_pg.C_scaffold_386000003 N 1.000
SNAP_00026457 Daphnia pulex SNAP_00026457 N 0.944
fgenesh1_pg.C_scaffold_175000012 Daphnia pulex fgenesh1_pg.C_scaffold_175000012 N 0.944
fgenesh1_pg.C_scaffold_55000099 Daphnia pulex fgenesh1_pg.C_scaffold_55000099 N 0.944
fgenesh1_pg.C_scaffold_829000002 Daphnia pulex fgenesh1_pg.C_scaffold_829000002 N 0.944
fgenesh1_pg.C_scaffold_169000020 Daphnia pulex fgenesh1_pg.C_scaffold_169000020 N 0.833
AT2G15650 Arabidopsis thaliana AT2G15650-TAIR-G N 0.722
AT1G50810 Arabidopsis thaliana AT1G50810-TAIR-G N 0.722
fgenesh1_pg.C_scaffold_11925000001 Capitella teleta fgenesh1_pg.C_scaffold_11925000001 N 0.722
fgenesh1_pg.C_scaffold_195000001 Daphnia pulex fgenesh1_pg.C_scaffold_195000001 N 0.722
AT1G35115 Arabidopsis thaliana AT1G35115-TAIR-G N 0.722
cassava33875.m1 Manihot esculenta cassava33875.m1 N 0.722
fgenesh1_pg.C_scaffold_6026000001 Capitella teleta fgenesh1_pg.C_scaffold_6026000001 N 0.722
NCBI_GNO_26900002 Daphnia pulex NCBI_GNO_26900002 N 0.722
NCBI_GNO_2600182 Daphnia pulex NCBI_GNO_2600182 N 0.722
Glyma13g15110.1 Glycine max Glyma13g15110.1 N 0.722
fgenesh1_pg.C_scaffold_836000001 Capitella teleta fgenesh1_pg.C_scaffold_836000001 N 0.722
s_475569 Phytophthora sojae s_475569 N 0.722
fgenesh1_pg.C_scaffold_64000087 Daphnia pulex fgenesh1_pg.C_scaffold_64000087 N 0.722
fgenesh1_pg.C_scaffold_642000003 Capitella teleta fgenesh1_pg.C_scaffold_642000003 N 0.722
Glyma01g26610.1 Glycine max Glyma01g26610.1 N 0.722