CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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s_439369
(
Phytophthora sojae
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
s_439369
T14731_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
s_439369
CCHC ZF
214
231
GKCFCCDQVGHMKRDCPE
Links
Other
CCHC ZF
family RBPs
Other
Phytophthora sojae
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA21349
Caenorhabditis japonica
CJA21349
N
0.000
CJA22679
Caenorhabditis japonica
CJA22679
N
0.000
estExt_fgenesh3_pg.C_320041
Postia placenta
estExt_fgenesh3_pg.C_320041
N
0.000
LOC_Os10g25990
Oryza sativa
LOC_Os10g25990
N
0.000
PTTG_05279
Puccinia triticina
PTTG_05279
N
0.000
PTTG_08980
Puccinia triticina
PTTG_08980
N
0.000