LOC_Os10g25990 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os10g25990 T12293_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os10g25990.1 CCHC ZF 273 290

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

15 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os03g16420 Oryza sativa LOC_Os03g16420 N 0.833
CJA21349 Caenorhabditis japonica CJA21349 N 0.722
CJA16826 Caenorhabditis japonica CJA16826 N 0.722
CJA22679 Caenorhabditis japonica CJA22679 N 0.722
CJA28798 Caenorhabditis japonica CJA28798 N 0.722
LOC_Os08g31920 Oryza sativa LOC_Os08g31920 N 0.722
BGIOSIBCE011830 Oryza indica BGIOSIBCE011830 N 0.722
PTTG_08980 Puccinia triticina PTTG_08980 N 0.722
CIMG_13627 Coccidioides immitis CIMG_13627 N 0.722
fgenesh1_pg.C_scaffold_305000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_305000001 N 0.722
CPSG_04175 Coccidioides posadasii CPSG_04175 N 0.722
PTTG_05279 Puccinia triticina PTTG_05279 N 0.722
PTTG_05387 Puccinia triticina PTTG_05387 N 0.722
PTTG_05310 Puccinia triticina PTTG_05310 N 0.722
fgenesh1_pg.C_scaffold_2853000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_2853000001 N 0.722