CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PTTG_08980
(
Puccinia triticina
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
PTTG_08980
T08436_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PTTG_08980T0
CCHC ZF
279
296
GLCFHCGERGHIARECPK
Links
Other
CCHC ZF
family RBPs
Other
Puccinia triticina
RBPs
44 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTTG_05279
Puccinia triticina
PTTG_05279
N
1.000
PTTG_05387
Puccinia triticina
PTTG_05387
N
0.944
PTTG_04681
Puccinia triticina
PTTG_04681
N
0.889
PTTG_05127
Puccinia triticina
PTTG_05127
N
0.833
PTTG_06677
Puccinia triticina
PTTG_06677
N
0.833
PTTG_11204
Puccinia triticina
PTTG_11204
N
0.833
PTTG_05245
Puccinia triticina
PTTG_05245
N
0.833
PTTG_01003
Puccinia triticina
PTTG_01003
N
0.833
PTTG_10688
Puccinia triticina
PTTG_10688
N
0.833
PTTG_08329
Puccinia triticina
PTTG_08329
N
0.833
PTTG_09697
Puccinia triticina
PTTG_09697
N
0.833
PTTG_09362
Puccinia triticina
PTTG_09362
N
0.833
PTTG_03611
Puccinia triticina
PTTG_03611
N
0.833
PTTG_10004
Puccinia triticina
PTTG_10004
N
0.833
PTTG_10119
Puccinia triticina
PTTG_10119
N
0.833
PTTG_03581
Puccinia triticina
PTTG_03581
N
0.833
PTTG_08372
Puccinia triticina
PTTG_08372
N
0.833
PTTG_07232
Puccinia triticina
PTTG_07232
N
0.833
PTTG_07053
Puccinia triticina
PTTG_07053
N
0.778
PTTG_08960
Puccinia triticina
PTTG_08960
N
0.778
PTTG_08342
Puccinia triticina
PTTG_08342
N
0.778
PTTG_06885
Puccinia triticina
PTTG_06885
N
0.778
PTTG_06629
Puccinia triticina
PTTG_06629
N
0.778
PTTG_06000
Puccinia triticina
PTTG_06000
N
0.778
PTTG_01306
Puccinia triticina
PTTG_01306
N
0.778
PTTG_10645
Puccinia triticina
PTTG_10645
N
0.778
PTTG_10464
Puccinia triticina
PTTG_10464
N
0.778
PTTG_10291
Puccinia triticina
PTTG_10291
N
0.778
PTTG_04497
Puccinia triticina
PTTG_04497
N
0.778
PTTG_09062
Puccinia triticina
PTTG_09062
N
0.778
PTTG_10706
Puccinia triticina
PTTG_10706
N
0.778
CBN00181
Caenorhabditis brenneri
CBN00181
N
0.778
PTTG_10344
Puccinia triticina
PTTG_10344
N
0.722
PTTG_09070
Puccinia triticina
PTTG_09070
N
0.722
PTTG_08665
Puccinia triticina
PTTG_08665
N
0.722
PTTG_10751
Puccinia triticina
PTTG_10751
N
0.722
PTTG_11057
Puccinia triticina
PTTG_11057
N
0.722
LOC_Os03g16420
Oryza sativa
LOC_Os03g16420
N
0.722
LOC_Os10g25990
Oryza sativa
LOC_Os10g25990
N
0.722
PTTG_05310
Puccinia triticina
PTTG_05310
N
0.722
CJA28798
Caenorhabditis japonica
CJA28798
N
0.722
BRADI3G11560
Brachypodium distachyon
BRADI3G11560
N
0.722
PTTG_05476
Puccinia triticina
PTTG_05476
N
0.722
PTTG_06752
Puccinia triticina
PTTG_06752
N
0.722