ENSCJAG00000033824 (Callithrix jacchus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSCJAG00000033824 T16795_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.915
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.915
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.847
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.847
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.847
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.833
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000040310 CSD 14 84

Links

Other CSD family RBPs
Other Callithrix jacchus RBPs

193 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT2G41900 Arabidopsis thaliana AT2G41900-TAIR-G N 0.000
B9GF07_POPTR Populus trichocarpa POPTR_0001s26560 N 0.000
B9HNW7_POPTR Populus trichocarpa POPTR_0009s05810 N 0.000
B9HSM9_POPTR Populus trichocarpa POPTR_0010s19520 N 0.000
B9I454_POPTR Populus trichocarpa POPTR_0012s12760 N 0.000
BRADI1G11760 Brachypodium distachyon BRADI1G11760 N 0.000
cassava36564.valid.m1 Manihot esculenta cassava36564.valid.m1 N 0.000
Cucsa.139290 Cucumis sativus Cucsa.139290 N 0.000
Glyma02g46610.1 Glycine max Glyma02g46610.1 N 0.000
Glyma14g01990.1 Glycine max Glyma14g01990.1 N 0.000
MDP0000196475 Malus x domestica MDP0000196475 N 0.000
MDP0000320891 Malus x domestica MDP0000320891 N 0.000
MDP0000673185 Malus x domestica MDP0000673185 N 0.000
MDP0000699611 Malus x domestica MDP0000699611 N 0.000
MDP0000911962 Malus x domestica MDP0000911962 N 0.000
Medtr3g028690 Medicago truncatula Medtr3g028690 N 0.000
mgf012825m Mimulus guttatus mgf012825m N 0.000
PK25575.1 Cannabis sativa PK25575.1 N 0.000
POPTR_0008s06940 Populus trichocarpa POPTR_0008s06940 N 0.000
ppa025636m Prunus persica ppa025636m N 0.000