MDP0000320891 (Malus x domestica)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 MDP0000320891 T06369_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000320891 CCCH ZF 427 449

Links

Other CCCH ZF family RBPs
Other Malus x domestica RBPs

58 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT2G41900 Arabidopsis thaliana AT2G41900-TAIR-G N 1.000
mgf012825m Mimulus guttatus mgf012825m N 1.000
MDP0000673185 Malus x domestica MDP0000673185 N 1.000
cassava36564.valid.m1 Manihot esculenta cassava36564.valid.m1 N 1.000
BRADI1G11760 Brachypodium distachyon BRADI1G11760 N 0.957
Medtr3g028690 Medicago truncatula Medtr3g028690 N 0.957
PK25575.1 Cannabis sativa PK25575.1 N 0.957
cassava37850.valid.m1 Manihot esculenta cassava37850.valid.m1 N 0.826
cassava18518.valid.m1 Manihot esculenta cassava18518.valid.m1 N 0.826
XM_002871484.1 Arabidopsis lyrata fgenesh2_kg.6__1236__AT5G12850.1 N 0.826
mgf009145m Mimulus guttatus mgf009145m N 0.826
AT5G12850 Arabidopsis thaliana AT5G12850-TAIR-G N 0.826
MDP0000200915 Malus x domestica MDP0000200915 N 0.826
MDP0000911962 Malus x domestica MDP0000911962 N 0.826
ppa002251m Prunus persica ppa002251m N 0.826
chr2.CM0002.380.nc Lotus japonicus chr2.CM0002.380.nc N 0.826
SB09G002390 Sorghum bicolor Sb09g002390 N 0.792
cassava23256.valid.m1 Manihot esculenta cassava23256.valid.m1 N 0.783
cassava23386.valid.m1 Manihot esculenta cassava23386.valid.m1 N 0.783
29681.m001358 Ricinus communis 29681.m001358 N 0.783
B9I454_POPTR Populus trichocarpa POPTR_0012s12760 N 0.783
cassava23387.valid.m1 Manihot esculenta cassava23387.valid.m1 N 0.783
MDP0000196475 Malus x domestica MDP0000196475 N 0.783
LjSGA_116351.1 Lotus japonicus LjSGA_116351.1 N 0.783
Glyma02g46610.1 Glycine max Glyma02g46610.1 N 0.783
Cucsa.368500 Cucumis sativus Cucsa.368500 N 0.783
Cucsa.139290 Cucumis sativus Cucsa.139290 N 0.783
B9HSM9_POPTR Populus trichocarpa POPTR_0010s19520 N 0.783
Medtr5g090250 Medicago truncatula Medtr5g090250 N 0.783
Glyma14g01990.1 Glycine max Glyma14g01990.1 N 0.783
B9GIG9_POPTR Populus trichocarpa POPTR_0001s25960 N 0.783
XM_002864537.1 Arabidopsis lyrata fgenesh2_kg.8__1801__AT5G58620.1 N 0.783
GSVIVG00024728001 Vitis vinifera GSVIVG00024728001 N 0.783
XM_002876298.1 Arabidopsis lyrata fgenesh2_kg.5__2030__AT3G55980.1 N 0.783
PK15838.1 Cannabis sativa PK15838.1 N 0.783
ATSZF1 Arabidopsis thaliana AT3G55980-TAIR-G N 0.783
SZF2 Arabidopsis thaliana AT2G40140-TAIR-G N 0.783
AT5G58620 Arabidopsis thaliana AT5G58620-TAIR-G N 0.783
PK05226.1 Cannabis sativa PK05226.1 N 0.783
POPTR_0008s06940 Populus trichocarpa POPTR_0008s06940 N 0.783
B9HP30_POPTR Populus trichocarpa POPTR_0009s05150 N 0.783
ppa002415m Prunus persica ppa002415m N 0.783
MDP0000678327 Malus x domestica MDP0000678327 N 0.783
MDP0000699611 Malus x domestica MDP0000699611 N 0.783
MDP0000588193 Malus x domestica MDP0000588193 N 0.783
GRMZM2G027298 Zea mays GRMZM2G027298 N 0.750
BRADI2G38247 Brachypodium distachyon BRADI2G38247 N 0.750
LOC_Os05g03760 Oryza sativa LOC_Os05g03760 N 0.750
LOC_Os12g33090 Oryza sativa LOC_Os12g33090 N 0.750
SB08G016640 Sorghum bicolor Sb08g016640 N 0.750
BGIOSIBCE017416 Oryza indica BGIOSIBCE017416 N 0.750
BRADI4G06290 Brachypodium distachyon BRADI4G06290 N 0.750
Glyma02g39210.1 Glycine max Glyma02g39210.1 N 0.739
Glyma14g37330.1 Glycine max Glyma14g37330.1 N 0.739
B9HNW7_POPTR Populus trichocarpa POPTR_0009s05810 N 0.739
ppa025636m Prunus persica ppa025636m N 0.739
GSVIVG00032807001 Vitis vinifera GSVIVG00032807001 N 0.739
BRADI4G05990 Brachypodium distachyon BRADI4G05990 N 0.708