B9HSM9_POPTR (Populus trichocarpa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 POPTR_0010s19520 T04058_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s19520.1 CCCH ZF 265 287

Links

Other CCCH ZF family RBPs
Other Populus trichocarpa RBPs

57 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma14g01990.1 Glycine max Glyma14g01990.1 N 0.957
Glyma02g46610.1 Glycine max Glyma02g46610.1 N 0.957
POPTR_0008s06940 Populus trichocarpa POPTR_0008s06940 N 0.957
B9I454_POPTR Populus trichocarpa POPTR_0012s12760 N 0.957
Medtr5g090250 Medicago truncatula Medtr5g090250 N 0.913
ppa002415m Prunus persica ppa002415m N 0.913
PK05226.1 Cannabis sativa PK05226.1 N 0.913
chr2.CM0002.380.nc Lotus japonicus chr2.CM0002.380.nc N 0.913
cassava37850.valid.m1 Manihot esculenta cassava37850.valid.m1 N 0.913
MDP0000588193 Malus x domestica MDP0000588193 N 0.913
cassava18518.valid.m1 Manihot esculenta cassava18518.valid.m1 N 0.913
MDP0000678327 Malus x domestica MDP0000678327 N 0.913
SZF2 Arabidopsis thaliana AT2G40140-TAIR-G N 0.870
ATSZF1 Arabidopsis thaliana AT3G55980-TAIR-G N 0.870
XM_002876298.1 Arabidopsis lyrata fgenesh2_kg.5__2030__AT3G55980.1 N 0.870
GSVIVG00032807001 Vitis vinifera GSVIVG00032807001 N 0.870
MDP0000196475 Malus x domestica MDP0000196475 N 0.826
PK25575.1 Cannabis sativa PK25575.1 N 0.826
MDP0000699611 Malus x domestica MDP0000699611 N 0.826
Cucsa.368500 Cucumis sativus Cucsa.368500 N 0.826
Cucsa.139290 Cucumis sativus Cucsa.139290 N 0.826
Glyma02g39210.1 Glycine max Glyma02g39210.1 N 0.826
Glyma14g37330.1 Glycine max Glyma14g37330.1 N 0.826
SB09G002390 Sorghum bicolor Sb09g002390 N 0.792
LOC_Os05g03760 Oryza sativa LOC_Os05g03760 N 0.792
BRADI2G38247 Brachypodium distachyon BRADI2G38247 N 0.792
BGIOSIBCE017416 Oryza indica BGIOSIBCE017416 N 0.792
PK15838.1 Cannabis sativa PK15838.1 N 0.783
GSVIVG00024728001 Vitis vinifera GSVIVG00024728001 N 0.783
B9HP30_POPTR Populus trichocarpa POPTR_0009s05150 N 0.783
XM_002864537.1 Arabidopsis lyrata fgenesh2_kg.8__1801__AT5G58620.1 N 0.783
AT5G58620 Arabidopsis thaliana AT5G58620-TAIR-G N 0.783
AT2G41900 Arabidopsis thaliana AT2G41900-TAIR-G N 0.783
B9GIG9_POPTR Populus trichocarpa POPTR_0001s25960 N 0.783
BRADI1G11760 Brachypodium distachyon BRADI1G11760 N 0.783
MDP0000320891 Malus x domestica MDP0000320891 N 0.783
Glyma11g27130.1 Glycine max Glyma11g27130.1 N 0.783
Glyma18g06980.1 Glycine max Glyma18g06980.1 N 0.783
ppa002251m Prunus persica ppa002251m N 0.783
cassava36564.valid.m1 Manihot esculenta cassava36564.valid.m1 N 0.783
cassava23387.valid.m1 Manihot esculenta cassava23387.valid.m1 N 0.783
29681.m001358 Ricinus communis 29681.m001358 N 0.783
cassava23256.valid.m1 Manihot esculenta cassava23256.valid.m1 N 0.783
cassava23386.valid.m1 Manihot esculenta cassava23386.valid.m1 N 0.783
mgf012825m Mimulus guttatus mgf012825m N 0.783
mgf009145m Mimulus guttatus mgf009145m N 0.783
MDP0000673185 Malus x domestica MDP0000673185 N 0.783
LjSGA_116351.1 Lotus japonicus LjSGA_116351.1 N 0.783
Medtr5g079420 Medicago truncatula Medtr5g079420 N 0.783
BRADI4G05990 Brachypodium distachyon BRADI4G05990 N 0.750
MDP0000200915 Malus x domestica MDP0000200915 N 0.739
MDP0000911962 Malus x domestica MDP0000911962 N 0.739
estExt_fgenesh1_pg.C_Chr_40023 Ostreococcus lucimarinus estExt_fgenesh1_pg.C_Chr_40023 N 0.739
XM_002871484.1 Arabidopsis lyrata fgenesh2_kg.6__1236__AT5G12850.1 N 0.739
AT5G12850 Arabidopsis thaliana AT5G12850-TAIR-G N 0.739
Medtr3g028690 Medicago truncatula Medtr3g028690 N 0.739
estExt_fgenesh1_pg.C_Chr_04.00010028 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_04.00010028 N 0.739