YBOX1_CHICK (Gallus gallus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSGALG00000004848 T16867_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		1.000
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		1.000
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.931
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.931
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.931
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.917
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000007728 CSD 3 73
ENSGALP00000038395 CSD 7 71
ENSGALP00000038408 CSD 3 73

Links

Other CSD family RBPs
Other Gallus gallus RBPs

219 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AGAP004942 Anopheles gambiae AGAP004942 N 0.000
amel4_ncbi_hmm16330 Apis mellifera amel4_ncbi_hmm16330 I 0.000
BGIBMGA012503 Bombyx mori BGIBMGA012503 N 0.000
DGIL_AUG5s5532g9t1 Acyrtosiphon pisum DGIL_AUG5s5532g9t1 I 0.000
FBgn0262737 Drosophila melanogaster FBgn0262737 N 0.000
fgenesh1_pm.C_scaffold_76000004 Capitella teleta fgenesh1_pm.C_scaffold_76000004 I 0.000
GA20351-RA Drosophila pseudoobscura FBgn0080346 N 0.000
GE22592 Drosophila yakuba FBgn0239809 N 0.000
GG16232 Drosophila erecta FBgn0108467 N 0.000
GI13561 Drosophila mojavensis FBgn0136316 N 0.000
GJ11921 Drosophila virilis FBgn0199174 N 0.000
GK10610 Drosophila willistoni FBgn0212625 N 0.000
ISCW016289 Ixodes scapularis ISCW016289 I 0.000
nasonia_NCBI_hmm938274 Nasonia vitripennis nasonia_NCBI_hmm938274 I 0.000
PASA_GEN_0700132 Daphnia pulex PASA_GEN_0700132 I 0.000