PASA_GEN_0700132 (Daphnia pulex)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 PASA_GEN_0700132 T21326_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		0.734
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
PASA_GEN_0700132 KH 19 79
PASA_GEN_0700132 KH 102 165
PASA_GEN_0700132 KH 270 334

Links

Other KH family RBPs
Other Daphnia pulex RBPs

41 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
nasonia_NCBI_hmm938274 Nasonia vitripennis nasonia_NCBI_hmm938274 I 0.864
AGAP004942 Anopheles gambiae AGAP004942 N 0.827
DGIL_AUG5s5532g9t1 Acyrtosiphon pisum DGIL_AUG5s5532g9t1 I 0.818
amel4_ncbi_hmm16330 Apis mellifera amel4_ncbi_hmm16330 I 0.812
GH14429 Drosophila grimshawi FBgn0121905 N 0.796
GI13561 Drosophila mojavensis FBgn0136316 N 0.796
GA20351-RA Drosophila pseudoobscura FBgn0080346 N 0.796
GJ11921 Drosophila virilis FBgn0199174 N 0.796
GG16232 Drosophila erecta FBgn0108467 N 0.796
GK10610 Drosophila willistoni FBgn0212625 N 0.796
FBgn0262737 Drosophila melanogaster FBgn0262737 N 0.796
GE22592 Drosophila yakuba FBgn0239809 N 0.796
estExt_gwp.C_3950051 Branchiostoma floridae estExt_gwp.C_3950051 I 0.738
fgenesh2_pg.scaffold_166000022 Branchiostoma floridae fgenesh2_pg.scaffold_166000022 I 0.738
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 0.734
PCBP3 Pan troglodytes ENSPTRG00000014010 I 0.734
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 0.734
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 0.734
PCBP3 Macaca mulatta ENSMMUG00000003825 I 0.734
Pcbp3 Mus musculus ENSMUSG00000001120 D 0.734
PCBP3 Cavia porcellus ENSCPOG00000003648 I 0.734
LOC100050101 Equus caballus ENSECAG00000012413 I 0.734
PCBP3 Homo sapiens ENSG00000183570 I 0.734
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.734
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 0.734
PCBP3 Anolis carolinensis ENSACAG00000004607 I 0.734
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 0.734
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.724
PCBP3 Gallus gallus ENSGALG00000013155 I 0.724
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.724
ISCW016289 Ixodes scapularis ISCW016289 I 0.723
BGIBMGA012503 Bombyx mori BGIBMGA012503 N 0.720
PCBP3 Macropus eugenii ENSMEUG00000012960 I 0.719
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.719
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.719
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 0.719
PCBP3 Takifugu rubripes ENSTRUG00000013604 I 0.719
fgenesh1_pm.C_scaffold_76000004 Capitella teleta fgenesh1_pm.C_scaffold_76000004 I 0.717
PCBP3 Gasterosteus aculeatus ENSGACG00000014955 I 0.714
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.714
PCBP3 Gallus gallus ENSGALG00000004394 I 0.708