PCBP3 (Loxodonta africana)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSLAFG00000020835 T18939_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		0.910
pcbp2
M211_0.6 		Danio rerio WWUCCC RNAcompete
Ray et al.(2013)
RNCMPT00246 		0.803
PCBP2
M043_0.6 		Homo sapiens CCYYCCH RNAcompete
Ray et al.(2013)
RNCMPT00044 		0.803
Pcbp1
M207_0.6 		Mus musculus CYUUCC RNAcompete
Ray et al.(2013)
RNCMPT00239 		0.782
PCBP1
M177_0.6 		Homo sapiens CCWWHCC RNAcompete
Ray et al.(2013)
RNCMPT00186 		0.782
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000015733 KH 29 74
ENSLAFP00000015733 KH 98 161
ENSLAFP00000015733 KH 262 324
ENSLAFP00000022452 KH 19 82
ENSLAFP00000022452 KH 163 225
ENSLAFP00000026802 KH 19 82
ENSLAFP00000026802 KH 188 250

Links

Other KH family RBPs
Other Loxodonta africana RBPs

107 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A6MKZ3_CALJA Callithrix jacchus ENSCJAG00000022539 I 0.777
AAH41241 Xenopus laevis AAH41241 I 0.798
AAH84195 Xenopus laevis AAH84195 I 0.798
Ame_R002707 Ailuropoda melanoleuca Ame_R002707 I 0.782
Ame_R007160 Ailuropoda melanoleuca Ame_R007160 I 0.983
Ame_R011627 Ailuropoda melanoleuca Ame_R011627 I 0.855
CAB50743 Xenopus laevis CAB50743 I 0.798
CAD13196 Xenopus laevis CAD13196 N 0.874
CAD29864 Xenopus laevis CAD29864 I 0.798
ENSACAG00000000783 Anolis carolinensis ENSACAG00000000783 I 0.803
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.878
ENSCJAG00000034075 Callithrix jacchus ENSCJAG00000034075 I 0.798
ENSCPOG00000000967 Cavia porcellus ENSCPOG00000000967 I 0.803
ENSGACG00000003044 Gasterosteus aculeatus ENSGACG00000003044 I 0.721
ENSGACG00000003197 Gasterosteus aculeatus ENSGACG00000003197 I 0.771
ENSGACG00000006681 Gasterosteus aculeatus ENSGACG00000006681 I 0.777
ENSLAFG00000013187 Loxodonta africana ENSLAFG00000013187 I 0.803
ENSMGAG00000006794 Meleagris gallopavo ENSMGAG00000006794 I 0.888
ENSMODG00000000280 Monodelphis domestica ENSMODG00000000280 I 0.803
ENSMODG00000017748 Monodelphis domestica ENSMODG00000017748 I 0.757
ENSOCUG00000022490 Oryctolagus cuniculus ENSOCUG00000022490 I 0.803
ENSORLG00000005176 Oryzias latipes ENSORLG00000005176 I 0.787
ENSORLG00000012872 Oryzias latipes ENSORLG00000012872 I 0.777
ENSORLG00000014385 Oryzias latipes ENSORLG00000014385 I 0.777
ENSPPYG00000004581 Pongo pygmaeus ENSPPYG00000004581 I 0.803
ENSPPYG00000012328 Pongo pygmaeus ENSPPYG00000012328 I 0.782
ENSTRUG00000009361 Takifugu rubripes ENSTRUG00000009361 I 0.782
ENSTRUG00000011419 Takifugu rubripes ENSTRUG00000011419 I 0.792
ENSTRUG00000017789 Takifugu rubripes ENSTRUG00000017789 I 0.803
estExt_gwp.C_3950051 Branchiostoma floridae estExt_gwp.C_3950051 I 0.709
fgenesh2_pg.scaffold_166000022 Branchiostoma floridae fgenesh2_pg.scaffold_166000022 I 0.709
LOC100050101 Equus caballus ENSECAG00000012413 I 0.910
LOC100050579 Equus caballus ENSECAG00000002544 I 0.782
LOC100392590 Callithrix jacchus ENSCJAG00000018590 I 0.821
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.910
LOC100409398 Callithrix jacchus ENSCJAG00000007694 I 0.750
PCBP1 Tetraodon nigroviridis ENSTNIG00000012585 I 0.777
PCBP1 Myotis lucifugus ENSMLUG00000014173 I 0.782
Pcbp1 Rattus norvegicus ENSRNOG00000017708 I 0.782
PCBP1 Gorilla gorilla ENSGGOG00000028130 I 0.782
PCBP1 Cavia porcellus ENSCPOG00000013511 I 0.782
PCBP1 Callithrix jacchus ENSCJAG00000004017 I 0.755
PCBP1 Homo sapiens ENSG00000169564 D 0.782
Pcbp1 Mus musculus ENSMUSG00000051695 D 0.782
PCBP1 Canis familiaris ENSCAFG00000013845 I 0.761
PCBP1 Pan troglodytes ENSPTRG00000012025 I 0.782
PCBP1_BOVIN Bos taurus ENSBTAG00000008985 I 0.782
PCBP1_RABIT Oryctolagus cuniculus ENSOCUG00000003634 I 0.782
PCBP2 Canis familiaris ENSCAFG00000006821 I 0.803
PCBP2 Ochotona princeps ENSOPRG00000004680 I 0.803
PCBP2 Choloepus hoffmanni ENSCHOG00000012759 N 0.874
PCBP2 Dasypus novemcinctus ENSDNOG00000008688 I 0.803
pcbp2 Xenopus tropicalis ENSXETG00000010491 N 0.953
PCBP2 Pteropus vampyrus ENSPVAG00000012284 I 0.803
PCBP2 Tursiops truncatus ENSTTRG00000017174 I 0.803
PCBP2 Tarsius syrichta ENSTSYG00000009771 I 0.844
PCBP2 Procavia capensis ENSPCAG00000005154 I 0.803
PCBP2 Sus scrofa ENSSSCG00000000274 I 0.803
PCBP2 Sorex araneus ENSSARG00000000999 N 0.874
PCBP2 Pan troglodytes ENSPTRG00000005018 I 0.803
PCBP2 Microcebus murinus ENSMICG00000011651 I 0.803
pcbp2 Danio rerio ENSDARG00000013184 D 0.803
PCBP2 Homo sapiens ENSG00000197111 D 0.832
PCBP2 Macaca mulatta ENSMMUG00000006608 I 0.825
PCBP2 Macropus eugenii ENSMEUG00000001887 I 0.718
PCBP2 Gorilla gorilla ENSGGOG00000012613 I 0.803
Pcbp2 Mus musculus ENSMUSG00000056851 I 0.803
PCBP2 Echinops telfairi ENSETEG00000014741 I 0.725
PCBP2 Equus caballus ENSECAG00000022389 I 0.803
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.888
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 0.910
PCBP3 Takifugu rubripes ENSTRUG00000013604 I 0.913
PCBP3 Gallus gallus ENSGALG00000013155 I 0.883
PCBP3 Gallus gallus ENSGALG00000004394 I 0.867
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 0.910
PCBP3 Gasterosteus aculeatus ENSGACG00000014955 I 0.883
PCBP3 Anolis carolinensis ENSACAG00000004607 I 0.910
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.888
pcbp3 Xenopus tropicalis ENSXETG00000012658 I 0.798
PCBP3 Homo sapiens ENSG00000183570 I 0.910
PCBP3 Felis catus ENSFCAG00000014812 I 0.931
PCBP3 Echinops telfairi ENSETEG00000015988 I 0.766
pcbp3 Danio rerio ENSDARG00000054378 I 0.965
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 0.888
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 0.910
PCBP3 Otolemur garnettii ENSOGAG00000008044 I 0.971
PCBP3 Ochotona princeps ENSOPRG00000003431 I 0.904
PCBP3 Oryzias latipes ENSORLG00000000059 I 0.841
PCBP3 Cavia porcellus ENSCPOG00000003648 I 0.910
PCBP3 Macaca mulatta ENSMMUG00000003825 I 0.910
PCBP3 Myotis lucifugus ENSMLUG00000003074 I 0.931
PCBP3 Microcebus murinus ENSMICG00000012679 I 0.977
PCBP3 Pan troglodytes ENSPTRG00000014010 I 0.910
PCBP3 Pteropus vampyrus ENSPVAG00000000832 I 0.734
PCBP3 Tetraodon nigroviridis ENSTNIG00000008872 I 0.700
PCBP3 Macropus eugenii ENSMEUG00000012960 I 0.862
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 0.910
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 0.910
Pcbp3 Mus musculus ENSMUSG00000001120 D 0.910
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.883
PCBP4 Monodelphis domestica ENSMODG00000011790 I 0.709
PCBP4 Takifugu rubripes ENSTRUG00000007426 I 0.780
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.899
Q3SYT9_BOVIN Bos taurus ENSBTAG00000020757 I 0.803
XP_001186958.1 Strongylocentrotus purpuratus XP_001186958.1 N 0.701
XP_792931.2 Strongylocentrotus purpuratus XP_792931.2 N 0.701