CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PNPT1
(
Taeniopygia guttata
)
KH,S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
PF00575 (S1)
IPR018111
IPR003029
ENSTGUG00000006908
T22382_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTGUP00000007158
KH
554
611
VETIHVPLSKRLRFVGPGAYNLKKLQAQTGVTVSQLDEETYSVFAPTPGAMHEAREFI
ENSTGUP00000007158
S1
622
697
NLEFGAIYTATITEIRDSGVMVKLYPNMTPVLLHISQLDQRKIKHPSALGLEVGHEIQVKYFGRDPTDGRMRLSRK
Links
Other
KH,S1
family RBPs
Other
Taeniopygia guttata
RBPs
33 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
21543_Multiple
Saccharomyces mikatae
21543_Multiple
N
0.000
22141_YPL190C
Saccharomyces paradoxus
22141_YPL190C
N
0.000
24695_YPL190C
Saccharomyces bayanus
24695_YPL190C
N
0.000
NAB3
Saccharomyces cerevisiae
YPL190C
N
0.000
Skud_Contig1252.2
Saccharomyces kudriavzevii
Skud_Contig1252.2
N
0.000
ZYRO0G08360g
Zygosaccharomyces rouxii
ZYRO0G08360g
N
0.000