CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PNPT1
(
Vicugna pacos
)
KH,S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
PF00575 (S1)
IPR018111
IPR003029
ENSVPAG00000007097
T22386_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSVPAP00000006606
KH
607
664
VETVQVPLSKRAKFVGPGGYHLKKLQAETGVTISQVDEETFSVFAPTPSAMHEARDFI
ENSVPAP00000006606
S1
675
750
QLEFGAVYTATITEIRDSGVMVKLYPNMTAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFERDPADGRMRLSRK
Links
Other
KH,S1
family RBPs
Other
Vicugna pacos
RBPs
35 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL000695
Aedes aegypti
AAEL000695
I
0.000
aret
Drosophila melanogaster
FBgn0000114
D
0.000
BGIBMGA010431
Bombyx mori
BGIBMGA010431
I
0.000
CPIJ016329
Culex quinquefasciatus
CPIJ016329
I
0.000
CpipJ_CPIJ016329
Culex pipiens
CpipJ_CPIJ016329
I
0.000
estExt_fgenesh2_pm.C_730008
Branchiostoma floridae
estExt_fgenesh2_pm.C_730008
I
0.000
FBgn0262475
Drosophila melanogaster
FBgn0262475
I
0.000
GA25731-RA
Drosophila pseudoobscura
FBgn0247108
N
0.000
GE18585
Drosophila yakuba
FBgn0235992
N
0.000
GL18622
Drosophila persimilis
FBgn0156223
N
0.000