Pum1 (Rattus norvegicus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSRNOG00000011709 T24264_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.993
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.993
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.890
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.890
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.890
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.890
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.890
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.784
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.784
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.784
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.784
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.784
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.784
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.784
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000015831 PUF 849 883
ENSRNOP00000015831 PUF 885 917
ENSRNOP00000015831 PUF 921 952
ENSRNOP00000015831 PUF 959 993
ENSRNOP00000015831 PUF 995 1029
ENSRNOP00000015831 PUF 1031 1065
ENSRNOP00000015831 PUF 1067 1097
ENSRNOP00000015831 PUF 1113 1144
ENSRNOP00000053076 PUF 606 640
ENSRNOP00000053076 PUF 642 674
ENSRNOP00000053076 PUF 678 712
ENSRNOP00000053076 PUF 714 748
ENSRNOP00000053076 PUF 750 784
ENSRNOP00000053076 PUF 786 820
ENSRNOP00000053076 PUF 822 852
ENSRNOP00000053076 PUF 868 899
ENSRNOP00000053078 PUF 752 786
ENSRNOP00000053078 PUF 788 820
ENSRNOP00000053078 PUF 824 855
ENSRNOP00000053078 PUF 862 896
ENSRNOP00000053078 PUF 898 932
ENSRNOP00000053078 PUF 934 968
ENSRNOP00000053078 PUF 970 1000
ENSRNOP00000053078 PUF 1016 1047
ENSRNOP00000053079 PUF 770 804
ENSRNOP00000053079 PUF 806 838
ENSRNOP00000053079 PUF 842 876
ENSRNOP00000053079 PUF 878 912
ENSRNOP00000053079 PUF 914 948
ENSRNOP00000053079 PUF 950 984
ENSRNOP00000053079 PUF 986 1016
ENSRNOP00000053079 PUF 1032 1063

Links

Other PUF family RBPs
Other Rattus norvegicus RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgenesh3_pg.104__45 Postia placenta fgenesh3_pg.104__45 N 0.000
fgenesh3_pg.105__20 Postia placenta fgenesh3_pg.105__20 N 0.000
fgenesh3_pg.105__25 Postia placenta fgenesh3_pg.105__25 N 0.000
fgenesh3_pg.10__8 Postia placenta fgenesh3_pg.10__8 N 0.000
fgenesh3_pg.112__22 Postia placenta fgenesh3_pg.112__22 N 0.000
fgenesh3_pg.116__36 Postia placenta fgenesh3_pg.116__36 N 0.000
fgenesh3_pg.121__37 Postia placenta fgenesh3_pg.121__37 N 0.000
fgenesh3_pg.123__39 Postia placenta fgenesh3_pg.123__39 N 0.000
fgenesh3_pg.126__4 Postia placenta fgenesh3_pg.126__4 N 0.000
fgenesh3_pg.132__35 Postia placenta fgenesh3_pg.132__35 N 0.000
fgenesh3_pg.1444__1 Postia placenta fgenesh3_pg.1444__1 N 0.000
fgenesh3_pg.1449__1 Postia placenta fgenesh3_pg.1449__1 N 0.000
fgenesh3_pg.148__21 Postia placenta fgenesh3_pg.148__21 N 0.000
fgenesh3_pg.148__30 Postia placenta fgenesh3_pg.148__30 N 0.000
fgenesh3_pg.163__28 Postia placenta fgenesh3_pg.163__28 N 0.000
fgenesh3_pg.166__24 Postia placenta fgenesh3_pg.166__24 N 0.000
fgenesh3_pg.184__17 Postia placenta fgenesh3_pg.184__17 N 0.000
fgenesh3_pg.189__1 Postia placenta fgenesh3_pg.189__1 N 0.000
fgenesh3_pg.197__9 Postia placenta fgenesh3_pg.197__9 N 0.000
fgenesh3_pg.198__7 Postia placenta fgenesh3_pg.198__7 N 0.000
fgenesh3_pg.2163__1 Postia placenta fgenesh3_pg.2163__1 N 0.000
fgenesh3_pg.21__107 Postia placenta fgenesh3_pg.21__107 N 0.000
fgenesh3_pg.243__4 Postia placenta fgenesh3_pg.243__4 N 0.000
fgenesh3_pg.261__4 Postia placenta fgenesh3_pg.261__4 N 0.000
fgenesh3_pg.27__16 Postia placenta fgenesh3_pg.27__16 N 0.000
fgenesh3_pg.293__1 Postia placenta fgenesh3_pg.293__1 N 0.000
fgenesh3_pg.297__4 Postia placenta fgenesh3_pg.297__4 N 0.000
fgenesh3_pg.2__91 Postia placenta fgenesh3_pg.2__91 N 0.000
fgenesh3_pg.329__2 Postia placenta fgenesh3_pg.329__2 N 0.000
fgenesh3_pg.332__3 Postia placenta fgenesh3_pg.332__3 N 0.000
fgenesh3_pg.43__58 Postia placenta fgenesh3_pg.43__58 N 0.000
fgenesh3_pg.4__199 Postia placenta fgenesh3_pg.4__199 N 0.000
fgenesh3_pg.51__31 Postia placenta fgenesh3_pg.51__31 N 0.000
fgenesh3_pg.53__73 Postia placenta fgenesh3_pg.53__73 N 0.000
fgenesh3_pg.546__1 Postia placenta fgenesh3_pg.546__1 N 0.000
fgenesh3_pg.57__58 Postia placenta fgenesh3_pg.57__58 N 0.000
fgenesh3_pg.5__137 Postia placenta fgenesh3_pg.5__137 N 0.000
fgenesh3_pg.64__3 Postia placenta fgenesh3_pg.64__3 N 0.000
fgenesh3_pg.64__50 Postia placenta fgenesh3_pg.64__50 N 0.000
fgenesh3_pg.68__61 Postia placenta fgenesh3_pg.68__61 N 0.000
fgenesh3_pg.74__37 Postia placenta fgenesh3_pg.74__37 N 0.000
fgenesh3_pg.77__15 Postia placenta fgenesh3_pg.77__15 N 0.000
fgenesh3_pg.77__34 Postia placenta fgenesh3_pg.77__34 N 0.000
fgenesh3_pg.79__5 Postia placenta fgenesh3_pg.79__5 N 0.000
fgenesh3_pg.8__167 Postia placenta fgenesh3_pg.8__167 N 0.000
fgenesh3_pg.9__112 Postia placenta fgenesh3_pg.9__112 N 0.000