Pum1 (Rattus norvegicus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSRNOG00000011709 T24264_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.993
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.993
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.890
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.890
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.890
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.890
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.890
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.784
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.784
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.784
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.784
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.784
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.784
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.784
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000015831 PUF 849 883
ENSRNOP00000015831 PUF 885 917
ENSRNOP00000015831 PUF 921 952
ENSRNOP00000015831 PUF 959 993
ENSRNOP00000015831 PUF 995 1029
ENSRNOP00000015831 PUF 1031 1065
ENSRNOP00000015831 PUF 1067 1097
ENSRNOP00000015831 PUF 1113 1144
ENSRNOP00000053076 PUF 606 640
ENSRNOP00000053076 PUF 642 674
ENSRNOP00000053076 PUF 678 712
ENSRNOP00000053076 PUF 714 748
ENSRNOP00000053076 PUF 750 784
ENSRNOP00000053076 PUF 786 820
ENSRNOP00000053076 PUF 822 852
ENSRNOP00000053076 PUF 868 899
ENSRNOP00000053078 PUF 752 786
ENSRNOP00000053078 PUF 788 820
ENSRNOP00000053078 PUF 824 855
ENSRNOP00000053078 PUF 862 896
ENSRNOP00000053078 PUF 898 932
ENSRNOP00000053078 PUF 934 968
ENSRNOP00000053078 PUF 970 1000
ENSRNOP00000053078 PUF 1016 1047
ENSRNOP00000053079 PUF 770 804
ENSRNOP00000053079 PUF 806 838
ENSRNOP00000053079 PUF 842 876
ENSRNOP00000053079 PUF 878 912
ENSRNOP00000053079 PUF 914 948
ENSRNOP00000053079 PUF 950 984
ENSRNOP00000053079 PUF 986 1016
ENSRNOP00000053079 PUF 1032 1063

Links

Other PUF family RBPs
Other Rattus norvegicus RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Pum1 Mus musculus ENSMUSG00000028580 I 1.000
PUM1 Oryctolagus cuniculus ENSOCUG00000008641 I 0.993
ENSPPYG00000001621 Pongo pygmaeus ENSPPYG00000001621 I 0.993
PUM1 Homo sapiens ENSG00000134644 D 0.993
Q3YAQ1_MACMU Macaca mulatta ENSMMUG00000013520 I 0.993
PUM1 Pan troglodytes ENSPTRG00000000453 I 0.993
PUM1 Sorex araneus ENSSARG00000003055 I 0.993
LOC100415491 Callithrix jacchus ENSCJAG00000006035 I 0.993
PUM1 Bos taurus ENSBTAG00000018979 I 0.989
PUM1 Canis familiaris ENSCAFG00000011205 I 0.989
PUM1 Vicugna pacos ENSVPAG00000005902 I 0.989
Ame_R012380 Ailuropoda melanoleuca Ame_R012380 I 0.989
PUM1 Erinaceus europaeus ENSEEUG00000003871 I 0.985
PUM1 Loxodonta africana ENSLAFG00000003178 I 0.985
PUM1 Equus caballus ENSECAG00000021369 I 0.982
PUM1 Sus scrofa ENSSSCG00000003591 I 0.981
PUM1 Tursiops truncatus ENSTTRG00000007436 I 0.978
PUM1 Pteropus vampyrus ENSPVAG00000005207 I 0.978
PUM1 Microcebus murinus ENSMICG00000007713 I 0.974
PUM1 Anolis carolinensis ENSACAG00000000682 I 0.964
PUM1 Monodelphis domestica ENSMODG00000017067 I 0.964
PUM1_CHICK Gallus gallus ENSGALG00000000597 I 0.963
PUM1 Meleagris gallopavo ENSMGAG00000000724 I 0.963
AAH80379 Xenopus laevis AAH80379 I 0.960
BAC57980 Xenopus laevis BAC57980 I 0.960
AAL14121 Xenopus laevis AAL14121 I 0.956
PUM1 Gasterosteus aculeatus ENSGACG00000005717 I 0.937
PUM1 Takifugu rubripes ENSTRUG00000013121 I 0.937
PUM1 Oryzias latipes ENSORLG00000011482 I 0.935
BAB20864 Xenopus laevis BAB20864 I 0.934
PUM1 Tetraodon nigroviridis ENSTNIG00000016983 I 0.919
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.895
PUM2 Bos taurus ENSBTAG00000011155 I 0.895
Pum2 Mus musculus ENSMUSG00000020594 D 0.895
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 0.895
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.895
PUM2 Homo sapiens ENSG00000055917 D 0.895
PUM2 Sus scrofa ENSSSCG00000008600 I 0.895
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.895
PUM2 Callithrix jacchus ENSCJAG00000007450 I 0.895
PUM2 Equus caballus ENSECAG00000021930 I 0.895
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 0.895
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.893
Pum2 Rattus norvegicus ENSRNOG00000006180 I 0.891
PUM2 Pan troglodytes ENSPTRG00000011692 I 0.890
PUM2 Canis familiaris ENSCAFG00000003839 I 0.890
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 0.890
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.890
PUM2 Vicugna pacos ENSVPAG00000005056 I 0.890
PUM2 Gorilla gorilla ENSGGOG00000011374 I 0.890
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.890
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.887
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.886
PUM2 Tarsius syrichta ENSTSYG00000014463 I 0.868
pum2 Xenopus tropicalis ENSXETG00000008903 I 0.868
PUM2 Takifugu rubripes ENSTRUG00000018167 I 0.868
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.864
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.864
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.864
PUM2 Oryzias latipes ENSORLG00000012611 I 0.864
XP_001187223.1 Strongylocentrotus purpuratus XP_001187223.1 I 0.814
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 0.814
e_gw.54.41.1 Nematostella vectensis e_gw.54.41.1 I 0.809
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.793
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.791
PHUM490070 Pediculus humanus PHUM490070 I 0.791
estExt_Genewise1Plus.C_sca_670070 Lottia gigantea estExt_Genewise1Plus.C_sca_670070 I 0.789
pum Drosophila melanogaster FBgn0003165 D 0.784
GM26283 Drosophila sechellia FBgn0181138 I 0.784
nasonia_NCBI_hmm823294 Nasonia vitripennis nasonia_NCBI_hmm823294 I 0.781
GF18428 Drosophila ananassae FBgn0095446 I 0.781
GE24797 Drosophila yakuba FBgn0241899 I 0.781
GK14049 Drosophila willistoni FBgn0216055 I 0.781
GG17394 Drosophila erecta FBgn0109620 I 0.781
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.781
AAEL012420 Aedes aegypti AAEL012420 I 0.781
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.781
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.778
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.777
GH15257 Drosophila grimshawi FBgn0122732 I 0.777
GI22503 Drosophila mojavensis FBgn0145231 I 0.777
GJ10105 Drosophila virilis FBgn0197393 I 0.773
AGAP003914 Anopheles gambiae AGAP003914 I 0.773
GL22345 Drosophila persimilis FBgn0159937 I 0.770
BGIBMGA003401 Bombyx mori BGIBMGA003401 I 0.766
DGIL_AUG5s1082g1t1 Acyrtosiphon pisum DGIL_AUG5s1082g1t1 I 0.766
e_gw1.9.429.1 Trichoplax adhaerens e_gw1.9.429.1 I 0.763
ENSCING00000003888 Ciona intestinalis ENSCING00000003888 I 0.756