CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DGIL_AUG5s14056g7t1
(
Acyrtosiphon pisum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
DGIL_AUG5s14056g7t1
T32007_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
DGIL_AUG5s14056g7t1
RRM
10
79
LFVGGLDYKTTDENLKKYFEQWGEIMDVVVMKDPQTKRSRGFGFITYAAAHMVDDAQGARPHKIDGRTVE
DGIL_AUG5s14056g7t1
RRM
101
170
LFVGLLNDSITEEDLKEYFSPYGNVTSAALVVHKETGKKRGFGFVEFDDYDPVDKICLKGSHIIKGKKID
Links
Other
RRM
family RBPs
Other
Acyrtosiphon pisum
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL010467
Aedes aegypti
AAEL010467
I
0.700
AGAP002374
Anopheles gambiae
AGAP002374
I
0.707
amel4_ncbi_hmm27519
Apis mellifera
amel4_ncbi_hmm27519
I
0.736
BGIBMGA006405
Bombyx mori
BGIBMGA006405
I
0.707
CPIJ001612
Culex quinquefasciatus
CPIJ001612
I
0.700
CpipJ_CPIJ001612
Culex pipiens
CpipJ_CPIJ001612
I
0.700
nasonia_NCBI_hmm916274
Nasonia vitripennis
nasonia_NCBI_hmm916274
I
0.721