CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AGAP002374
(
Anopheles gambiae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AGAP002374
T32477_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
Hrb87F
M029_0.6
Drosophila melanogaster
GGUAGGG
RNAcompete
Ray et al.(2013)
RNCMPT00029
0.807
Hrb98DE
M093_0.6
Drosophila melanogaster
RGUAGGG
RNAcompete
Ray et al.(2013)
RNCMPT00096
0.729
Hrb98DE
M092_0.6
Drosophila melanogaster
GGUAGGG
RNAcompete
Ray et al.(2013)
RNCMPT00095
0.729
Hrb98DE
M091_0.6
Drosophila melanogaster
GKUAGGK
RNAcompete
Ray et al.(2013)
RNCMPT00094
0.729
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AGAP002374-PA
RRM
31
100
LFIGGLDYRTTDDTLKAYFEKWGKVVDVVVMKDPKTKRSRGFGFITYSKSYMIDDAQASRPHKIDGRVVE
AGAP002374-PA
RRM
122
191
LFVGGLRDDFDEEHLREYFSKYGNVISACIVTDKDNGKKRGFGFVEFDDYDPVDKIILQKSHTIQNKLLD
Links
Other
RRM
family RBPs
Other
Anopheles gambiae
RBPs
29 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL010467
Aedes aegypti
AAEL010467
I
0.914
CPIJ001612
Culex quinquefasciatus
CPIJ001612
I
0.907
CpipJ_CPIJ001612
Culex pipiens
CpipJ_CPIJ001612
I
0.907
GA26465-RA
Drosophila pseudoobscura
FBgn0247839
I
0.807
GG17033
Drosophila erecta
FBgn0109261
I
0.807
Hrb87F
Drosophila melanogaster
FBgn0004237
D
0.807
GM25918
Drosophila sechellia
FBgn0180774
I
0.800
GI10692
Drosophila mojavensis
FBgn0133456
I
0.800
GE24426
Drosophila yakuba
FBgn0241543
I
0.800
GK13334
Drosophila willistoni
FBgn0215343
I
0.800
GF17368
Drosophila ananassae
FBgn0094386
I
0.800
GH19058
Drosophila grimshawi
FBgn0126525
I
0.793
GJ23111
Drosophila virilis
FBgn0210213
I
0.793
nasonia_NCBI_hmm916274
Nasonia vitripennis
nasonia_NCBI_hmm916274
I
0.750
amel4_ncbi_hmm27519
Apis mellifera
amel4_ncbi_hmm27519
I
0.743
GI10577
Drosophila mojavensis
FBgn0133341
I
0.736
GF18582
Drosophila ananassae
FBgn0095600
I
0.736
GE23791
Drosophila yakuba
FBgn0240946
I
0.729
GA26796-RA
Drosophila pseudoobscura
FBgn0248169
I
0.729
GD21374
Drosophila simulans
FBgn0192810
I
0.729
GG11603
Drosophila erecta
FBgn0103900
I
0.729
Hrb98DE
Drosophila melanogaster
FBgn0001215
D
0.729
GH17116
Drosophila grimshawi
FBgn0124586
I
0.729
GL13791
Drosophila persimilis
FBgn0151396
I
0.729
GJ22934
Drosophila virilis
FBgn0210037
I
0.729
GM16385
Drosophila sechellia
FBgn0171300
I
0.729
BGIBMGA006405
Bombyx mori
BGIBMGA006405
I
0.721
GK12096
Drosophila willistoni
FBgn0214107
I
0.721
DGIL_AUG5s14056g7t1
Acyrtosiphon pisum
DGIL_AUG5s14056g7t1
N
0.707