CpipJ_CPIJ001612 (Culex pipiens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CpipJ_CPIJ001612 T28868_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Hrb87F
M029_0.6 		Drosophila melanogaster GGUAGGG RNAcompete
Ray et al.(2013)
RNCMPT00029 		0.771
Hrb98DE
M093_0.6 		Drosophila melanogaster RGUAGGG RNAcompete
Ray et al.(2013)
RNCMPT00096 		0.743
Hrb98DE
M092_0.6 		Drosophila melanogaster GGUAGGG RNAcompete
Ray et al.(2013)
RNCMPT00095 		0.743
Hrb98DE
M091_0.6 		Drosophila melanogaster GKUAGGK RNAcompete
Ray et al.(2013)
RNCMPT00094 		0.743
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ001612-RA RRM 26 95
CpipJ_CPIJ001612-RA RRM 117 186

Links

Other RRM family RBPs
Other Culex pipiens RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPIJ001612 Culex quinquefasciatus CPIJ001612 I 1.000
AAEL010467 Aedes aegypti AAEL010467 I 0.971
AGAP002374 Anopheles gambiae AGAP002374 I 0.907
GK13334 Drosophila willistoni FBgn0215343 I 0.793
GI10692 Drosophila mojavensis FBgn0133456 I 0.779
GM25918 Drosophila sechellia FBgn0180774 I 0.779
GF17368 Drosophila ananassae FBgn0094386 I 0.779
GE24426 Drosophila yakuba FBgn0241543 I 0.779
GH19058 Drosophila grimshawi FBgn0126525 I 0.771
GA26465-RA Drosophila pseudoobscura FBgn0247839 I 0.771
GJ23111 Drosophila virilis FBgn0210213 I 0.771
GG17033 Drosophila erecta FBgn0109261 I 0.771
Hrb87F Drosophila melanogaster FBgn0004237 D 0.771
GF18582 Drosophila ananassae FBgn0095600 I 0.750
GM16385 Drosophila sechellia FBgn0171300 I 0.743
GD21374 Drosophila simulans FBgn0192810 I 0.743
GE23791 Drosophila yakuba FBgn0240946 I 0.743
GI10577 Drosophila mojavensis FBgn0133341 I 0.743
Hrb98DE Drosophila melanogaster FBgn0001215 D 0.743
GG11603 Drosophila erecta FBgn0103900 I 0.743
GJ22934 Drosophila virilis FBgn0210037 I 0.736
GL13791 Drosophila persimilis FBgn0151396 I 0.736
GK12096 Drosophila willistoni FBgn0214107 I 0.736
GH17116 Drosophila grimshawi FBgn0124586 I 0.736
GA26796-RA Drosophila pseudoobscura FBgn0248169 I 0.736
amel4_ncbi_hmm27519 Apis mellifera amel4_ncbi_hmm27519 I 0.729
nasonia_NCBI_hmm916274 Nasonia vitripennis nasonia_NCBI_hmm916274 I 0.721
BGIBMGA006405 Bombyx mori BGIBMGA006405 I 0.707
DGIL_AUG5s14056g7t1 Acyrtosiphon pisum DGIL_AUG5s14056g7t1 N 0.700