CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ATEG_09567
(
Aspergillus terreus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADATEAG00004434
T33746_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADATEAP00004434
RRM
39
109
VIATNIHEEASEEDVTDLFAEYGEIKNFNLNLDRRTGYVKGYALIEYSTLPEASEAIKALNGSKLLDQTIH
Links
Other
RRM
family RBPs
Other
Aspergillus terreus
RBPs
22 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ACLA_091280
Aspergillus clavatus
CADACLAG00008586
N
0.930
AFLA_092480
Aspergillus flavus
CADAFLAG00008933
N
0.944
AFUA_2G03260
Aspergillus fumigatus
CADAFUAG00003323
N
0.944
An07g07690
Aspergillus niger
CADANGAG00006043
N
0.972
ANIA_04505
Aspergillus nidulans
CADANIAG00005939
N
0.915
AO090120000261
Aspergillus oryzae
CADAORAG00011410
N
0.930
ARB_00312
Arthroderma benhamiae
ARB_00312
N
0.887
BDBG_04679
Blastomyces dermatitidis
BDBG_04679
N
0.887
CIMG_04543
Coccidioides immitis
CIMG_04543
N
0.887
CPSG_06388
Coccidioides posadasii
CPSG_06388
N
0.887
estExt_fgenesh1_kg.C_chr_10019
Mycosphaerella graminicola
estExt_fgenesh1_kg.C_chr_10019
N
0.718
fgenesh1_pg.00009_#_169
Aspergillus carbonarius
fgenesh1_pg.00009_#_169
N
0.958
MCYG_05630
Microsporum canis
MCYG_05630
N
0.887
MGYG_02725
Microsporum gypseum
MGYG_02725
N
0.887
NFIA_035610
Neosartorya fischeri
CADNFIAG00003400
N
0.944
PABG_01051
Paracoccidioides brasiliensis
PABG_01051
N
0.887
Pc18g03980
Penicillium chrysogenum
Pc18g03980
N
0.887
PMAA_055960
Penicillium marneffei
PMAA_055960
N
0.901
TEQG_00651
Trichophyton equinum
TEQG_00651
N
0.887
TERG_06808
Trichophyton rubrum
TERG_06808
N
0.887
TESG_05569
Trichophyton tonsurans
TESG_05569
N
0.887
UREG_01752
Uncinocarpus reesii
UREG_01752
N
0.873