CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Pc18g03980
(
Penicillium chrysogenum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Pc18g03980
T57985_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pc18g03980.t1
RRM
43
113
IIASNIHEEASEEDVTELFAEYGEIKNFSLNLDRRTGYVKGYALIEYSTLPEASEAIQNLNGSKLLEQTLH
Links
Other
RRM
family RBPs
Other
Penicillium chrysogenum
RBPs
21 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AFUA_2G03260
Aspergillus fumigatus
CADAFUAG00003323
N
0.887
An07g07690
Aspergillus niger
CADANGAG00006043
N
0.887
ATEG_09567
Aspergillus terreus
CADATEAG00004434
N
0.887
NFIA_035610
Neosartorya fischeri
CADNFIAG00003400
N
0.887
fgenesh1_pg.00009_#_169
Aspergillus carbonarius
fgenesh1_pg.00009_#_169
N
0.873
ANIA_04505
Aspergillus nidulans
CADANIAG00005939
N
0.873
ACLA_091280
Aspergillus clavatus
CADACLAG00008586
N
0.873
AFLA_092480
Aspergillus flavus
CADAFLAG00008933
N
0.859
PMAA_055960
Penicillium marneffei
PMAA_055960
N
0.859
AO090120000261
Aspergillus oryzae
CADAORAG00011410
N
0.845
TESG_05569
Trichophyton tonsurans
TESG_05569
N
0.803
ARB_00312
Arthroderma benhamiae
ARB_00312
N
0.803
MCYG_05630
Microsporum canis
MCYG_05630
N
0.803
MGYG_02725
Microsporum gypseum
MGYG_02725
N
0.803
TERG_06808
Trichophyton rubrum
TERG_06808
N
0.803
TEQG_00651
Trichophyton equinum
TEQG_00651
N
0.803
UREG_01752
Uncinocarpus reesii
UREG_01752
N
0.789
PABG_01051
Paracoccidioides brasiliensis
PABG_01051
N
0.789
BDBG_04679
Blastomyces dermatitidis
BDBG_04679
N
0.789
CPSG_06388
Coccidioides posadasii
CPSG_06388
N
0.775
CIMG_04543
Coccidioides immitis
CIMG_04543
N
0.775