LOC100386717 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000000043 T35455_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ESRP2
M141_0.6 		Homo sapiens UGGGRAD RNAcompete
Ray et al.(2013)
RNCMPT00150 		0.731
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000000103 RRM 67 136
ENSCJAP00000000103 RRM 168 240
ENSCJAP00000000103 RRM 287 359
ENSCJAP00000000109 RRM 67 136
ENSCJAP00000000109 RRM 168 240
ENSCJAP00000000109 RRM 287 355
ENSCJAP00000000111 RRM 260 332
ENSCJAP00000000111 RRM 364 436
ENSCJAP00000000111 RRM 483 555

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

74 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH44002 Xenopus laevis AAH44002 I 0.935
Ame_R015210 Ailuropoda melanoleuca Ame_R015210 I 0.991
ENSPPYG00000018753 Pongo pygmaeus ENSPPYG00000018753 I 0.995
ESRP1 Anolis carolinensis ENSACAG00000003748 I 0.926
ESRP1 Meleagris gallopavo ENSMGAG00000012042 I 0.926
ESRP1 Monodelphis domestica ENSMODG00000007268 I 0.972
ESRP1 Sus scrofa ENSSSCG00000006099 I 0.991
ESRP1 Tarsius syrichta ENSTSYG00000006036 I 0.986
ESRP1 Loxodonta africana ENSLAFG00000001498 I 0.995
ESRP1 Microcebus murinus ENSMICG00000008757 I 0.995
ESRP1 Macaca mulatta ENSMMUG00000021112 I 0.986
ESRP1 Pteropus vampyrus ENSPVAG00000014513 I 0.991
Esrp1 Mus musculus ENSMUSG00000040728 I 0.981
ESRP1 Ornithorhynchus anatinus ENSOANG00000004746 I 0.977
ESRP1 Pan troglodytes ENSPTRG00000020430 I 0.995
ESRP1 Oryctolagus cuniculus ENSOCUG00000001316 I 0.991
ESRP1 Gorilla gorilla ENSGGOG00000003627 I 0.995
ESRP1 Takifugu rubripes ENSTRUG00000009287 N 0.759
ESRP1 Tursiops truncatus ENSTTRG00000004226 I 0.981
esrp1 Danio rerio ENSDARG00000011245 I 0.829
ESRP1 Cavia porcellus ENSCPOG00000012197 I 0.995
esrp1 Xenopus tropicalis ENSXETG00000014667 I 0.935
ESRP1 Equus caballus ENSECAG00000000784 I 0.991
ESRP1 Erinaceus europaeus ENSEEUG00000001673 I 0.977
ESRP1 Canis familiaris ENSCAFG00000009305 I 0.991
ESRP1 Felis catus ENSFCAG00000009920 I 0.991
ESRP1 Homo sapiens ENSG00000104413 I 0.995
ESRP1 Tetraodon nigroviridis ENSTNIG00000018367 N 0.764
ESRP1 Vicugna pacos ENSVPAG00000006566 I 0.981
Esrp2 Rattus norvegicus ENSRNOG00000023177 I 0.773
ESRP2 Tetraodon nigroviridis ENSTNIG00000011350 N 0.000
ESRP2 Sorex araneus ENSSARG00000014176 I 0.773
ESRP2 Takifugu rubripes ENSTRUG00000007941 N 0.000
ESRP2 Procavia capensis ENSPCAG00000005215 I 0.782
ESRP2 Oryzias latipes ENSORLG00000011955 N 0.000
ESRP2 Dasypus novemcinctus ENSDNOG00000018588 I 0.778
Esrp2 Dipodomys ordii ENSDORG00000000665 I 0.787
ESRP2 Echinops telfairi ENSETEG00000006068 I 0.787
ESRP2 Loxodonta africana ENSLAFG00000014609 I 0.769
ESRP2 Macropus eugenii ENSMEUG00000014322 I 0.829
ESRP2 Myotis lucifugus ENSMLUG00000005934 I 0.778
ESRP2 Monodelphis domestica ENSMODG00000005183 I 0.801
ESRP2 Ochotona princeps ENSOPRG00000013401 I 0.773
ESRP2 Ornithorhynchus anatinus ENSOANG00000010972 I 0.778
ESRP2 Meleagris gallopavo ENSMGAG00000003943 I 0.829
ESRP2 Anolis carolinensis ENSACAG00000009900 I 0.806
esrp2 Danio rerio ENSDARG00000018814 I 0.829
ESRP2_CHICK Gallus gallus ENSGALG00000003374 I 0.829
LOC788414 Bos taurus ENSBTAG00000021838 I 0.986
Q7ZY29 Xenopus laevis Q7ZY29 I 0.935
RBM35A Gallus gallus ENSGALG00000015968 I 0.926
RBM35A Taeniopygia guttata ENSTGUG00000011907 I 0.935
RBM35B Taeniopygia guttata ENSTGUG00000006986 I 0.819
RGD1560481 Rattus norvegicus ENSRNOG00000008184 I 0.981