CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Esrp2
(
Dipodomys ordii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDORG00000000665
T36405_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ESRP2
M141_0.6
Homo sapiens
UGGGRAD
RNAcompete
Ray et al.(2013)
RNCMPT00150
0.860
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDORP00000000619
RRM
249
317
VRARGLPWQSSDQDVARFFQGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGIRYI
ENSDORP00000000619
RRM
350
422
LRLRGLPFSAGPTDVLDFLGPQCPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRKHKGMLGKRYIE
ENSDORP00000000619
RRM
467
539
VRLRGLPYAATIEDILSFLGDAAADIRPHGVHMVLNQQGRPSGDAFIQMMSAERALAAAQRCHKKVMKERYVE
Links
Other
RRM
family RBPs
Other
Dipodomys ordii
RBPs
69 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
A6H7B7_BOVIN
Bos taurus
ENSBTAG00000011596
I
0.000
A6MLI3_CALJA
Callithrix jacchus
ENSCJAG00000014884
I
0.000
Ame_R004936
Ailuropoda melanoleuca
Ame_R004936
I
0.000
ENSPPYG00000005945
Pongo pygmaeus
ENSPPYG00000005945
I
0.000
estExt_fgenesh2_pg.C_690104
Branchiostoma floridae
estExt_fgenesh2_pg.C_690104
N
0.000
LOC100053264
Equus caballus
ENSECAG00000026873
I
0.000
Sfrs5
Rattus norvegicus
ENSRNOG00000005513
I
0.000
SRSF5
Pteropus vampyrus
ENSPVAG00000009828
I
0.000
SRSF5
Sorex araneus
ENSSARG00000001059
I
0.000
SRSF5
Sus scrofa
ENSSSCG00000002312
I
0.000
SRSF5
Tupaia belangeri
ENSTBEG00000001972
I
0.000
SRSF5
Tarsius syrichta
ENSTSYG00000007786
I
0.000
SRSF5
Tursiops truncatus
ENSTTRG00000003318
I
0.000
SRSF5
Vicugna pacos
ENSVPAG00000006448
I
0.000
SRSF5
Pan troglodytes
ENSPTRG00000006488
I
0.000
SRSF5
Cavia porcellus
ENSCPOG00000005949
I
0.000
SRSF5
Ochotona princeps
ENSOPRG00000008286
I
0.000
SRSF5
Felis catus
ENSFCAG00000008848
I
0.000
SRSF5
Homo sapiens
ENSG00000100650
D
0.000
SRSF5
Gorilla gorilla
ENSGGOG00000016462
I
0.000
SRSF5
Microcebus murinus
ENSMICG00000009661
I
0.000
SRSF5
Myotis lucifugus
ENSMLUG00000011939
I
0.000
SRSF5
Macaca mulatta
ENSMMUG00000022407
I
0.000
Srsf5
Mus musculus
ENSMUSG00000021134
I
0.000
SRSF5
Oryctolagus cuniculus
ENSOCUG00000009274
I
0.000
SRSF5
Canis familiaris
ENSCAFG00000016589
I
0.000
SRSF5
Otolemur garnettii
ENSOGAG00000015122
I
0.000