CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TIAL1
(
Echinops telfairi
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSETEG00000020276
T37027_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSETEP00000016470
RRM
1
45
YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGF
ENSETEP00000016470
RRM
38
85
RVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK
ENSETEP00000016470
RRM
105
175
VFVGDLSPEITTEDIKSAFGPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR
ENSETEP00000016470
RRM
213
276
VYCGGIASGLTYQLKRQTFSPFGQIMEIRVFPEKYSFVRFSTHESAAHAIVSVNGTTIEGHVVK
Links
Other
RRM
family RBPs
Other
Echinops telfairi
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH45086
Xenopus laevis
AAH45086
N
0.852
Ame_R003219
Ailuropoda melanoleuca
Ame_R003219
N
0.983
CAC95017
Xenopus laevis
CAC95017
N
0.852
TIA1
Monodelphis domestica
ENSMODG00000011515
I
0.786
tial1
Xenopus tropicalis
ENSXETG00000010234
N
0.884
TIAL1
Takifugu rubripes
ENSTRUG00000017931
I
0.765
TIAL1
Taeniopygia guttata
ENSTGUG00000011148
N
0.983
TIAL1
Sorex araneus
ENSSARG00000012980
N
0.966
TIAL1
Otolemur garnettii
ENSOGAG00000011417
N
0.835
TIAL1
Oryctolagus cuniculus
ENSOCUG00000003783
I
0.983
TIAL1
Monodelphis domestica
ENSMODG00000008865
I
0.983
TIAL1
Myotis lucifugus
ENSMLUG00000004645
N
0.808
TIAL1
Meleagris gallopavo
ENSMGAG00000011368
N
0.983
TIAL1
Loxodonta africana
ENSLAFG00000003412
N
0.983
TIAL1
Erinaceus europaeus
ENSEEUG00000011861
N
0.935