CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SFPQ
(
Felis catus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSFCAG00000012305
T37128_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSFCAP00000011418
RRM
34
101
LSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFERCSEGVFLLTT
Links
Other
RRM
family RBPs
Other
Felis catus
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH45128
Xenopus laevis
AAH45128
I
0.000
Ame_R017809
Ailuropoda melanoleuca
Ame_R017809
I
0.000
BAE54372
Xenopus laevis
BAE54372
I
0.000
ENSCAFG00000017071
Canis familiaris
ENSCAFG00000017071
I
0.000
ENSCPOG00000010263
Cavia porcellus
ENSCPOG00000010263
I
0.000
ENSOCUG00000021848
Oryctolagus cuniculus
ENSOCUG00000021848
I
0.000
ENSPPYG00000020451
Pongo pygmaeus
ENSPPYG00000020451
I
0.000
ENSTNIG00000011331
Tetraodon nigroviridis
ENSTNIG00000011331
I
0.000
ENSTRUG00000003783
Takifugu rubripes
ENSTRUG00000003783
I
0.000
LOC607081
Canis familiaris
ENSCAFG00000003207
I
0.000
LOC697263
Macaca mulatta
ENSMMUG00000020481
I
0.000
NONO
Otolemur garnettii
ENSOGAG00000004834
I
0.000
NONO
Oryzias latipes
ENSORLG00000012801
N
0.000
NONO
Procavia capensis
ENSPCAG00000002541
I
0.000
NONO
Pteropus vampyrus
ENSPVAG00000016503
I
0.000
Nono
Rattus norvegicus
ENSRNOG00000003689
I
0.000
NONO
Taeniopygia guttata
ENSTGUG00000007048
I
0.000
NONO
Tursiops truncatus
ENSTTRG00000009605
I
0.000
NONO
Vicugna pacos
ENSVPAG00000002272
I
0.000
nono
Xenopus tropicalis
ENSXETG00000020868
I
0.000
Nono
Mus musculus
ENSMUSG00000031311
I
0.000
NONO
Erinaceus europaeus
ENSEEUG00000014404
I
0.000
NONO
Homo sapiens
ENSG00000147140
D
0.000
NONO
Gasterosteus aculeatus
ENSGACG00000011824
I
0.000
nono
Danio rerio
ENSDARG00000020482
I
0.000
NONO
Gorilla gorilla
ENSGGOG00000006194
I
0.000
NONO
Loxodonta africana
ENSLAFG00000013422
I
0.000
NONO
Macropus eugenii
ENSMEUG00000004294
I
0.000
NONO
Meleagris gallopavo
ENSMGAG00000008869
I
0.000
NONO
Microcebus murinus
ENSMICG00000000232
I
0.000
NONO
Monodelphis domestica
ENSMODG00000004445
I
0.000
NONO
Equus caballus
ENSECAG00000008502
I
0.000
pspc1
Danio rerio
ENSDARG00000006621
N
0.000
Q2KJ42_BOVIN
Bos taurus
ENSBTAG00000012152
I
0.000
Q5ZIZ5_CHICK
Gallus gallus
ENSGALG00000005507
I
0.000
TAF1
Callithrix jacchus
ENSCJAG00000013390
I
0.000
XR_025068.1
Pan troglodytes
ENSPTRG00000022010
I
0.000