CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PSPC1
(
Ornithorhynchus anatinus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOANG00000009017
T39514_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOANP00000014347
RRM
34
98
LTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFL
Links
Other
RRM
family RBPs
Other
Ornithorhynchus anatinus
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PSPC1
Vicugna pacos
ENSVPAG00000010029
N
1.000
PSPC1
Tupaia belangeri
ENSTBEG00000002361
N
1.000
LOC100053345
Equus caballus
ENSECAG00000017286
N
1.000
PSPC1
Otolemur garnettii
ENSOGAG00000012643
N
0.985
PSPC1
Microcebus murinus
ENSMICG00000013970
N
0.985
PSPC1
Meleagris gallopavo
ENSMGAG00000015134
N
0.955
ENSMODG00000017937
Monodelphis domestica
ENSMODG00000017937
I
0.735
SFPQ
Felis catus
ENSFCAG00000012305
N
0.735
SFPQ
Sorex araneus
ENSSARG00000006409
N
0.735
ENSOANG00000008789
Ornithorhynchus anatinus
ENSOANG00000008789
I
0.721