ENSMODG00000017937 (Monodelphis domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMODG00000017937 T39192_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		0.977
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.977
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		0.752
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		0.752
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000022371 RRM 293 357
ENSMODP00000022371 RRM 367 434
ENSMODP00000022373 RRM 17 84

Links

Other RRM family RBPs
Other Monodelphis domestica RBPs

116 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 1.000
SFPQ Felis catus ENSFCAG00000012305 N 1.000
SFPQ Sorex araneus ENSSARG00000006409 N 1.000
ENSOANG00000008789 Ornithorhynchus anatinus ENSOANG00000008789 I 0.992
SFPQ Spermophilus tridecemlineatus ENSSTOG00000014004 I 0.977
Sfpq Rattus norvegicus ENSRNOG00000013154 I 0.977
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.977
SFPQ Echinops telfairi ENSETEG00000001095 I 0.977
Q91017_CHICK Gallus gallus ENSGALG00000002514 I 0.977
LOC100069588 Equus caballus ENSECAG00000000642 I 0.977
Ame_R005060 Ailuropoda melanoleuca Ame_R005060 I 0.977
LOC100386194 Callithrix jacchus ENSCJAG00000001431 I 0.977
SFPQ Bos taurus ENSBTAG00000016328 I 0.977
SFPQ Cavia porcellus ENSCPOG00000015018 I 0.977
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.977
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.977
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.977
SFPQ Taeniopygia guttata ENSTGUG00000001722 I 0.977
SFPQ Homo sapiens ENSG00000116560 D 0.977
SFPQ Microcebus murinus ENSMICG00000011755 I 0.977
ENSPPYG00000001560 Pongo pygmaeus ENSPPYG00000001560 I 0.977
SFPQ Procavia capensis ENSPCAG00000006164 I 0.977
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.977
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.977
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.977
Sfpq Mus musculus ENSMUSG00000028820 I 0.977
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.977
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.947
XM_532566.2 Canis familiaris ENSCAFG00000018271 I 0.947
ENSACAG00000013307 Anolis carolinensis ENSACAG00000013307 I 0.940
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.917
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.917
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.902
sfpq Xenopus tropicalis ENSXETG00000009682 I 0.872
ENSTRUG00000003783 Takifugu rubripes ENSTRUG00000003783 I 0.872
ENSCAFG00000017608 Canis familiaris ENSCAFG00000017608 I 0.865
ENSTNIG00000011331 Tetraodon nigroviridis ENSTNIG00000011331 I 0.857
ENSGACG00000002034 Gasterosteus aculeatus ENSGACG00000002034 I 0.842
ENSORLG00000007459 Oryzias latipes ENSORLG00000007459 I 0.812
ENSCJAG00000035318 Callithrix jacchus ENSCJAG00000035318 I 0.805
sfpq Danio rerio ENSDARG00000011564 I 0.797
SFPQ Macaca mulatta ENSMMUG00000019154 I 0.789
SFPQ Choloepus hoffmanni ENSCHOG00000009131 I 0.782
PSPC1 Meleagris gallopavo ENSMGAG00000015134 N 0.779
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.767
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.767
PSPC1_CHICK Gallus gallus ENSGALG00000017142 I 0.767
ENSMGAG00000004237 Meleagris gallopavo ENSMGAG00000004237 I 0.759
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.759
NONO Gorilla gorilla ENSGGOG00000006194 I 0.752
NONO Equus caballus ENSECAG00000008502 I 0.752
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.752
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.752
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.752
NONO Loxodonta africana ENSLAFG00000013422 I 0.752
NONO Microcebus murinus ENSMICG00000000232 I 0.752
NONO Macropus eugenii ENSMEUG00000004294 I 0.752
TAF1 Callithrix jacchus ENSCJAG00000013390 I 0.752
NONO Homo sapiens ENSG00000147140 D 0.752
LOC697263 Macaca mulatta ENSMMUG00000020481 I 0.752
Q2KJ42_BOVIN Bos taurus ENSBTAG00000012152 I 0.752
NONO Procavia capensis ENSPCAG00000002541 I 0.752
NONO Otolemur garnettii ENSOGAG00000004834 I 0.752
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.752
XR_025068.1 Pan troglodytes ENSPTRG00000022010 I 0.752
NONO Vicugna pacos ENSVPAG00000002272 I 0.752
ENSPPYG00000020451 Pongo pygmaeus ENSPPYG00000020451 I 0.752
Ame_R017809 Ailuropoda melanoleuca Ame_R017809 I 0.752
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.752
Nono Mus musculus ENSMUSG00000031311 I 0.752
NONO Spermophilus tridecemlineatus ENSSTOG00000015869 I 0.752
NONO Tursiops truncatus ENSTTRG00000009605 I 0.752
LOC607081 Canis familiaris ENSCAFG00000003207 I 0.752
Nono Rattus norvegicus ENSRNOG00000003689 I 0.752
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.744
PSPC1 Sorex araneus ENSSARG00000000888 I 0.744
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.744
PSPC1 Macropus eugenii ENSMEUG00000000476 I 0.744
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.744
NONO Monodelphis domestica ENSMODG00000004445 I 0.744
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.744
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.744
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.744
NONO Sorex araneus ENSSARG00000007959 I 0.744
ENSPPYG00000005186 Pongo pygmaeus ENSPPYG00000005186 I 0.744
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.744
PSPC1 Homo sapiens ENSG00000121390 I 0.744
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.744
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.744
Ame_R014248 Ailuropoda melanoleuca Ame_R014248 I 0.744
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.744
Pspc1 Mus musculus ENSMUSG00000021938 I 0.744
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.744
Q5ZIZ5_CHICK Gallus gallus ENSGALG00000005507 I 0.737
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.737
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.737
PSPC1_BOVIN Bos taurus ENSBTAG00000003934 I 0.737
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.737
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.737
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.737
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.737
PSPC1 Tupaia belangeri ENSTBEG00000002361 N 0.735
PSPC1 Vicugna pacos ENSVPAG00000010029 N 0.735
LOC100053345 Equus caballus ENSECAG00000017286 N 0.735
PSPC1 Ornithorhynchus anatinus ENSOANG00000009017 N 0.735
ENSCJAG00000003136 Callithrix jacchus ENSCJAG00000003136 I 0.729
NONO Myotis lucifugus ENSMLUG00000002489 I 0.729
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.729
PSPC1 Felis catus ENSFCAG00000013701 I 0.722
PSPC1 Otolemur garnettii ENSOGAG00000012643 N 0.721
PSPC1 Microcebus murinus ENSMICG00000013970 N 0.721
ENSRNOG00000030425 Rattus norvegicus ENSRNOG00000030425 I 0.714
nono Xenopus tropicalis ENSXETG00000020868 I 0.707
pspc1 Danio rerio ENSDARG00000006621 N 0.707
AAH45128 Xenopus laevis AAH45128 I 0.707
BAE54372 Xenopus laevis BAE54372 I 0.707