CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PSPC1
(
Meleagris gallopavo
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMGAG00000015134
T38447_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMGAP00000016047
RRM
40
105
LTVKNLSPVVSNELLEQAFSQFGPVERAVVVVDDRGRATGKGFVEFAAKPPARKALERCSDGAFLL
Links
Other
RRM
family RBPs
Other
Meleagris gallopavo
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PSPC1
Ornithorhynchus anatinus
ENSOANG00000009017
N
0.955
PSPC1
Vicugna pacos
ENSVPAG00000010029
N
0.955
LOC100053345
Equus caballus
ENSECAG00000017286
N
0.955
PSPC1
Tupaia belangeri
ENSTBEG00000002361
N
0.955
PSPC1
Otolemur garnettii
ENSOGAG00000012643
N
0.939
PSPC1
Microcebus murinus
ENSMICG00000013970
N
0.939
ENSMODG00000017937
Monodelphis domestica
ENSMODG00000017937
I
0.779
SFPQ
Sorex araneus
ENSSARG00000006409
N
0.779
SFPQ
Felis catus
ENSFCAG00000012305
N
0.779
ENSOANG00000008789
Ornithorhynchus anatinus
ENSOANG00000008789
I
0.765