CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ESRP2
(
Ornithorhynchus anatinus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOANG00000010972
T39533_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ESRP2
M141_0.6
Homo sapiens
UGGGRAD
RNAcompete
Ray et al.(2013)
RNCMPT00150
0.759
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOANP00000017385
RRM
251
320
IRARGLPWQSSDQHIARFFIGLNIAKGGVALCLNAQGRRNGEALVRFVNSDHRDLALERHKHHMGSRYIE
ENSOANP00000017385
RRM
352
424
IRLRGLPFSATPDDVLGFLGPECPVTGGPEGLLFVRYPDGRPTGDAFALFACEDAAQSALRRHKGILGKRYIE
ENSOANP00000017385
RRM
472
544
VRLRGLPYTAGIDDVLDFMGEATADIRPHGVHMVLNQQGRPSGDAFIQMKSAERAQVAAQRCHKKMMKERYVE
ENSOANP00000017386
RRM
229
298
IRARGLPWQSSDQHIARFFIGLNIAKGGVALCLNAQGRRNGEALVRFVNSDHRDLALERHKHHMGSRYIE
ENSOANP00000017386
RRM
330
402
IRLRGLPFSATPDDVLGFLGPECPVTGGPEGLLFVRYPDGRPTGDAFALFACEDAAQSALRRHKGILGKRYIE
ENSOANP00000017386
RRM
450
522
VRLRGLPYTAGIDDVLDFMGEATADIRPHGVHMVLNQQGRPSGDAFIQMKSAERAQVAAQRCHKKMMKERYVE
Links
Other
RRM
family RBPs
Other
Ornithorhynchus anatinus
RBPs
70 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSMODG00000003473
Monodelphis domestica
ENSMODG00000003473
N
0.000
Hnrnpm
Mus musculus
ENSMUSG00000059208
N
0.000
HNRNPM
Tarsius syrichta
ENSTSYG00000011487
N
0.000