CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSPPYG00000018753
(
Pongo pygmaeus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPPYG00000018753
T40593_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ESRP2
M141_0.6
Homo sapiens
UGGGRAD
RNAcompete
Ray et al.(2013)
RNCMPT00150
0.731
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPPYP00000021034
RRM
272
341
VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIE
ENSPPYP00000021034
RRM
373
445
VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE
ENSPPYP00000021034
RRM
492
564
IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVE
Links
Other
RRM
family RBPs
Other
Pongo pygmaeus
RBPs
73 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AT3G15010
Arabidopsis thaliana
AT3G15010-TAIR-G
N
0.000
B9GGV7_POPTR
Populus trichocarpa
POPTR_0001s38640
N
0.000
B9H2J4_POPTR
Populus trichocarpa
POPTR_0004s05450
N
0.000
B9I1M7_POPTR
Populus trichocarpa
POPTR_0011s07480
N
0.000
cassava18809.valid.m1
Manihot esculenta
cassava18809.valid.m1
N
0.000
cassava28994.valid.m1
Manihot esculenta
cassava28994.valid.m1
N
0.000
cassava28995.valid.m1
Manihot esculenta
cassava28995.valid.m1
N
0.000
cassava28996.valid.m1
Manihot esculenta
cassava28996.valid.m1
N
0.000
Glyma07g32660.1
Glycine max
Glyma07g32660.1
N
0.000
LjT18N19.10.nd
Lotus japonicus
LjT18N19.10.nd
N
0.000
MDP0000250519
Malus x domestica
MDP0000250519
N
0.000
MDP0000596919
Malus x domestica
MDP0000596919
N
0.000
mgf018937m
Mimulus guttatus
mgf018937m
N
0.000
PK03611.1
Cannabis sativa
PK03611.1
N
0.000
ppa005857m
Prunus persica
ppa005857m
N
0.000
XM_002882862.1
Arabidopsis lyrata
fgenesh2_kg.3__1628__AT3G15010.2
N
0.000
XM_002894385.1
Arabidopsis lyrata
scaffold_105150.1
N
0.000