CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
TIAL1
(
Tetraodon nigroviridis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTNIG00000013091
T42110_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
TIA1
M156_0.6
Homo sapiens
WUUUUUB
RNAcompete
Ray et al.(2013)
RNCMPT00165
0.703
TIA1
M075_0.6
Homo sapiens
UUUUUBK
RNAcompete
Ray et al.(2013)
RNCMPT00077
0.703
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000016072
RRM
12
60
LYVGNLSREVTEILILQLFSQIGPCRSCKMITDKNLLPSYFCFVNLSSL
ENSTNIP00000016072
RRM
99
169
VFVGDLSPDITTEDIRAAFAPFGHISDARVLKDMATGKSKGYGFVSFYNKLDAENAISKMAGQWLQGRQIR
ENSTNIP00000016072
RRM
207
271
VYCGGIQAGLTEHLMQQTFSPFGQIMEIRVFPDKGYSFIRFSSHDSAAHAIVSVNGTVIEGNVVK
Links
Other
RRM
family RBPs
Other
Tetraodon nigroviridis
RBPs
29 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH44277
Xenopus laevis
AAH44277
I
0.000
AAH70981
Xenopus laevis
AAH70981
I
0.000
AAI61696
Xenopus laevis
AAI61696
I
0.000
AAI69815
Xenopus laevis
AAI69815
I
0.000
AAI69923
Xenopus laevis
AAI69923
I
0.000
AAN77160
Xenopus laevis
AAN77160
I
0.000
AAN77161
Xenopus laevis
AAN77161
I
0.000
Ame_R010564
Ailuropoda melanoleuca
Ame_R010564
I
0.000
ENSGACG00000016563
Gasterosteus aculeatus
ENSGACG00000016563
I
0.000
ENSORLG00000003540
Oryzias latipes
ENSORLG00000003540
I
0.000
ENSPPYG00000001219
Pongo pygmaeus
ENSPPYG00000001219
I
0.000
ENSPPYG00000009454
Pongo pygmaeus
ENSPPYG00000009454
I
0.000
ENSPPYG00000019172
Pongo pygmaeus
ENSPPYG00000019172
I
0.000
ENSSSCG00000003767
Sus scrofa
ENSSSCG00000003767
I
0.000
ENSSSCG00000003771
Sus scrofa
ENSSSCG00000003771
I
0.000
ENSTRUG00000004615
Takifugu rubripes
ENSTRUG00000004615
I
0.000
FUBP1
Oryctolagus cuniculus
ENSOCUG00000002225
I
0.000
FUBP1
Otolemur garnettii
ENSOGAG00000014233
I
0.000
Fubp1
Mus musculus
ENSMUSG00000028034
I
0.000
FUBP1
Macaca mulatta
ENSMMUG00000002899
I
0.000
FUBP1
Myotis lucifugus
ENSMLUG00000014802
I
0.000
FUBP1
Ornithorhynchus anatinus
ENSOANG00000009777
I
0.000
FUBP1
Pan troglodytes
ENSPTRG00000000888
I
0.000
FUBP1
Taeniopygia guttata
ENSTGUG00000006841
I
0.000
FUBP1
Spermophilus tridecemlineatus
ENSSTOG00000014312
I
0.000
FUBP1
Tarsius syrichta
ENSTSYG00000000148
I
0.000
FUBP1
Tursiops truncatus
ENSTTRG00000000096
I
0.000
FUBP1
Vicugna pacos
ENSVPAG00000004709
I
0.000
fubp1
Xenopus tropicalis
ENSXETG00000013137
I
0.000
FUBP1
Meleagris gallopavo
ENSMGAG00000009424
I
0.000
FUBP1
Procavia capensis
ENSPCAG00000012617
I
0.000
FUBP1
Loxodonta africana
ENSLAFG00000003273
I
0.000
fubp1
Danio rerio
ENSDARG00000029248
I
0.000
FUBP1
Equus caballus
ENSECAG00000010867
I
0.000
FUBP1
Homo sapiens
ENSG00000162613
I
0.000
FUBP1
Anolis carolinensis
ENSACAG00000006310
I
0.000
FUBP1
Cavia porcellus
ENSCPOG00000002757
I
0.000
FUBP1
Callithrix jacchus
ENSCJAG00000007062
I
0.000
Fubp1
Dipodomys ordii
ENSDORG00000016534
I
0.000
FUBP1
Gorilla gorilla
ENSGGOG00000027554
I
0.000
FUBP1
Canis familiaris
ENSCAFG00000020361
I
0.000
FUBP1
Choloepus hoffmanni
ENSCHOG00000008177
I
0.000
KHSRP
Spermophilus tridecemlineatus
ENSSTOG00000002371
I
0.000
Khsrp
Dipodomys ordii
ENSDORG00000002447
I
0.000
KHSRP
Sus scrofa
ENSSSCG00000013538
I
0.000
KHSRP
Dasypus novemcinctus
ENSDNOG00000009590
I
0.000
KHSRP
Tetraodon nigroviridis
ENSTNIG00000014067
I
0.000
KHSRP
Tursiops truncatus
ENSTTRG00000010390
I
0.000
KHSRP
Anolis carolinensis
ENSACAG00000015398
I
0.000
KHSRP
Takifugu rubripes
ENSTRUG00000010395
I
0.000
KHSRP
Danio rerio
ENSDARG00000026489
I
0.000
KHSRP
Cavia porcellus
ENSCPOG00000005140
I
0.000
KHSRP
Canis familiaris
ENSCAFG00000018667
I
0.000
KHSRP
Vicugna pacos
ENSVPAG00000010837
I
0.000
KHSRP
Callithrix jacchus
ENSCJAG00000016627
I
0.000
khsrp
Xenopus tropicalis
ENSXETG00000021862
I
0.000
KHSRP
Monodelphis domestica
ENSMODG00000001952
I
0.000
KHSRP
Homo sapiens
ENSG00000088247
D
0.000
KHSRP
Loxodonta africana
ENSLAFG00000002426
I
0.000
KHSRP
Myotis lucifugus
ENSMLUG00000015543
I
0.000
KHSRP
Macaca mulatta
ENSMMUG00000005597
I
0.000
Khsrp
Mus musculus
ENSMUSG00000007670
I
0.000
KHSRP
Gorilla gorilla
ENSGGOG00000007028
I
0.000
KHSRP
Ornithorhynchus anatinus
ENSOANG00000000261
I
0.000
KHSRP
Gasterosteus aculeatus
ENSGACG00000018990
I
0.000
KHSRP
Gasterosteus aculeatus
ENSGACG00000012422
I
0.000
KHSRP
Ochotona princeps
ENSOPRG00000010594
I
0.000
KHSRP
Oryzias latipes
ENSORLG00000011882
I
0.000
KHSRP
Pteropus vampyrus
ENSPVAG00000007251
I
0.000
KHSRP
Pan troglodytes
ENSPTRG00000010364
I
0.000
KHSRP
Microcebus murinus
ENSMICG00000007863
I
0.000
KHSRP
Echinops telfairi
ENSETEG00000004793
I
0.000
KHSRP
Felis catus
ENSFCAG00000003731
I
0.000
KHSRP
Macropus eugenii
ENSMEUG00000016601
I
0.000
KHSRP
Procavia capensis
ENSPCAG00000000246
I
0.000
LOC100065608
Equus caballus
ENSECAG00000018305
I
0.000
LOC505564
Bos taurus
ENSBTAG00000021018
I
0.000
Q08DJ3_BOVIN
Bos taurus
ENSBTAG00000008926
I
0.000
Q5ZHW0_CHICK
Gallus gallus
ENSGALG00000008939
I
0.000