CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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G3BP1
(
Vicugna pacos
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSVPAG00000004461
T42736_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
G3BP1
M302_0.6
Homo sapiens
Sequence logo not available
ACCCMYMSGCMS
SELEX
Cook et al.(2011)
432_11604510
0.984
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSVPAP00000004143
RRM
341
404
LFIGNLPHEVDKSELKDFFQNYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGE
Links
Other
RRM
family RBPs
Other
Vicugna pacos
RBPs
87 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CTRG_05067
Candida tropicalis
CTRG_05067
N
0.000
DEHA0A05764g
Debaryomyces hansenii
DEHA0A05764g
N
0.000
e_gw1.10.335.1
Mucor circinelloides
e_gw1.10.335.1
N
0.000
GSTUMT00006382001
Tuber melanosporum
GSTUMT00006382001
N
0.000
gw1.198.122.1
Physcomitrella patens
gw1.198.122.1
N
0.000