CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CTRG_05067
(
Candida tropicalis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CTRG_05067
T29144_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CTRT_05067
RRM
122
192
IYIGRLPEGFQEKELKTYFKQFGDIVNLKLSRNKKTGKSKHYGFIEFQSFEVAKIAAETMNNYLLFGHLIK
Links
Other
RRM
family RBPs
Other
Candida tropicalis
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Cd36_70640
Candida dubliniensis
Cd36_70640
N
0.873
NOP15
Candida albicans
orf19.7050
N
0.831
gww1.3.1.1553.1
Pichia stipitis
gww1.3.1.1553.1
N
0.789
CPAG_04667
Candida parapsilosis
CPAG_04667
N
0.775
LELG_05128
Lodderomyces elongisporus
LELG_05128
N
0.775
DEHA0A05764g
Debaryomyces hansenii
DEHA0A05764g
N
0.761
CLUG_02861
Candida lusitaniae
CLUG_02861
N
0.732
PGUG_03493
Candida guilliermondii
PGUG_03493
N
0.704