CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CG1340
(
Drosophila melanogaster
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0039797
T43085_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0085061
RRM
65
132
AYVGNLPKGLVQGDVMKIFSDFEVKNVRLIKDRETDEFKGYGYVEFETLAQLKSALNCNGRIKLDNFS
Links
Other
RRM
family RBPs
Other
Drosophila melanogaster
RBPs
21 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AB01983.1
Alternaria brassicicola
AB01983.1
N
0.000
ACLA_054290
Aspergillus clavatus
CADACLAG00005245
N
0.000
AFLA_114740
Aspergillus flavus
CADAFLAG00013392
N
0.000
AO090206000081
Aspergillus oryzae
CADAORAG00012242
N
0.000
CIMG_08661
Coccidioides immitis
CIMG_08661
N
0.000
CPSG_05597
Coccidioides posadasii
CPSG_05597
N
0.000
estExt_Genewise1.C_30334
Cochliobolus heterostrophus C5
estExt_Genewise1.C_30334
N
0.000
e_gw1.3.693.1
Trichoderma reesei
e_gw1.3.693.1
N
0.000
fgenesh1_pg.C_scaffold_13000098
Trichoderma virens
fgenesh1_pg.C_scaffold_13000098
N
0.000
fgenesh1_pg.C_scaffold_8000400
Trichoderma atroviride
fgenesh1_pg.C_scaffold_8000400
N
0.000
fgenesh1_pm.00795_#_61
Aspergillus carbonarius
fgenesh1_pm.00795_#_61
N
0.000
HCAG_08016
Histoplasma capsulatum
HCAG_08016
N
0.000
Pc13g06240
Penicillium chrysogenum
Pc13g06240
N
0.000
PMAA_085380
Penicillium marneffei
PMAA_085380
N
0.000
UREG_02651
Uncinocarpus reesii
UREG_02651
N
0.000