CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
GJ24240
(
Drosophila virilis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0211322
T44133_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0238657
RRM
50
116
AFVGNLPKGLVQGDVMKIFDDFEVKSVRLIKDRETDEFKGYGYVEFTTLEQLKRALSRNGRIKLDNL
Links
Other
RRM
family RBPs
Other
Drosophila virilis
RBPs
21 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GH14211
Drosophila grimshawi
FBgn0121687
N
0.955
GK14152
Drosophila willistoni
FBgn0216158
N
0.882
GF22920
Drosophila ananassae
FBgn0099914
N
0.882
GG11771
Drosophila erecta
FBgn0104066
N
0.882
GE10899
Drosophila yakuba
FBgn0228732
N
0.882
GD21542
Drosophila simulans
FBgn0192968
N
0.853
GM12901
Drosophila sechellia
FBgn0167833
N
0.853
CG1340
Drosophila melanogaster
FBgn0039797
N
0.853
GA12257-RA
Drosophila pseudoobscura
FBgn0072303
N
0.809
GL13513
Drosophila persimilis
FBgn0151118
N
0.809
GL20267
Drosophila persimilis
FBgn0157862
N
0.791
GA18178-RA
Drosophila pseudoobscura
FBgn0078185
N
0.791
GJ19028
Drosophila virilis
FBgn0206174
N
0.761
GM13442
Drosophila sechellia
FBgn0168373
N
0.761
GK25675
Drosophila willistoni
FBgn0227634
N
0.761
GE17274
Drosophila yakuba
FBgn0234750
N
0.761
GF19517
Drosophila ananassae
FBgn0096524
N
0.761
GG17966
Drosophila erecta
FBgn0110185
N
0.761
FBgn0262734
Drosophila melanogaster
FBgn0262734
N
0.761
GI21487
Drosophila mojavensis
FBgn0144217
N
0.761
GH22433
Drosophila grimshawi
FBgn0129891
N
0.746