CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GM17744
(
Drosophila sechellia
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0172652
T43839_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0199221
RRM
10
81
IQVTNIAPQATKDQMQTLFGNIGKIEEIRLYPTIRDVSCPVQSRICYVKYTDTTSVPVAQHLTNTVFIDRAL
FBpp0199221
RRM
166
231
IIVCDVKNEWRLDDLMECFQRAGEVKYARWAEKDNKTYCMIEFCEQTSIIHALRMQGQEFKGGHLS
Links
Other
RRM
family RBPs
Other
Drosophila sechellia
RBPs
13 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPIJ018619
Culex quinquefasciatus
CPIJ018619
N
0.703
CpipJ_CPIJ018619
Culex pipiens
CpipJ_CPIJ018619
N
0.703
GA18291-RA
Drosophila pseudoobscura
FBgn0078296
N
0.986
GD23635
Drosophila simulans
FBgn0195012
N
1.000
GE18876
Drosophila yakuba
FBgn0236256
N
0.993
GF15723
Drosophila ananassae
FBgn0092747
N
0.978
GG10062
Drosophila erecta
FBgn0102374
N
0.986
GH11300
Drosophila grimshawi
FBgn0118780
N
0.964
GI17720
Drosophila mojavensis
FBgn0140461
N
0.957
GJ17548
Drosophila virilis
FBgn0204718
N
0.964
GK18279
Drosophila willistoni
FBgn0220278
N
0.964
GL18941
Drosophila persimilis
FBgn0156542
N
0.978
Srp54
Drosophila melanogaster
FBgn0024285
N
1.000