CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CpipJ_CPIJ018619
(
Culex pipiens
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CpipJ_CPIJ018619
T29023_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CpipJ_CPIJ018619-RA
RRM
10
81
VQITNIAPQATKDQMQSLFGHIGKIDEIRLYPTIRDVSCPVVSRICYVKFFETSCVAVAQHLTNTVFIDRAL
CpipJ_CPIJ018619-RA
RRM
139
204
LLVLDVKSDWRLEDLMDHFKVAGEIKYARFADNERTRYALLEFCEQKSIILGLKMQGSEFRGYRLS
Links
Other
RRM
family RBPs
Other
Culex pipiens
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPIJ018619
Culex quinquefasciatus
CPIJ018619
N
1.000
AAEL011568
Aedes aegypti
AAEL011568
N
0.899
AGAP002265
Anopheles gambiae
AGAP002265
N
0.806
GG10062
Drosophila erecta
FBgn0102374
N
0.717
GE18876
Drosophila yakuba
FBgn0236256
N
0.710
GL18941
Drosophila persimilis
FBgn0156542
N
0.710
GF15723
Drosophila ananassae
FBgn0092747
N
0.710
GA18291-RA
Drosophila pseudoobscura
FBgn0078296
N
0.710
Srp54
Drosophila melanogaster
FBgn0024285
N
0.703
GM17744
Drosophila sechellia
FBgn0172652
N
0.703
GD23635
Drosophila simulans
FBgn0195012
N
0.703