CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
GG10062
(
Drosophila erecta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0102374
T43313_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0128608
RRM
10
81
IQVTNIAPQATKDQMQTLFGNIGKIEEIRLYPTIRDVSCPVQSRICYVKYTETTSVPVAQHLTNTVFIDRAL
FBpp0128608
RRM
166
231
IIVCDVKNEWRLDDLMDCFQRAGEVKYARWAEKDNKTYCMIEFCEQTSIIHALRMQGQEFKGGHLS
Links
Other
RRM
family RBPs
Other
Drosophila erecta
RBPs
13 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GE18876
Drosophila yakuba
FBgn0236256
N
0.993
GA18291-RA
Drosophila pseudoobscura
FBgn0078296
N
0.986
Srp54
Drosophila melanogaster
FBgn0024285
N
0.986
GD23635
Drosophila simulans
FBgn0195012
N
0.986
GM17744
Drosophila sechellia
FBgn0172652
N
0.986
GL18941
Drosophila persimilis
FBgn0156542
N
0.978
GF15723
Drosophila ananassae
FBgn0092747
N
0.964
GK18279
Drosophila willistoni
FBgn0220278
N
0.964
GJ17548
Drosophila virilis
FBgn0204718
N
0.964
GH11300
Drosophila grimshawi
FBgn0118780
N
0.964
GI17720
Drosophila mojavensis
FBgn0140461
N
0.957
CPIJ018619
Culex quinquefasciatus
CPIJ018619
N
0.717
CpipJ_CPIJ018619
Culex pipiens
CpipJ_CPIJ018619
N
0.717