LOC_Os02g21430 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os02g21430 T44960_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os02g21430.1 RRM 195 260
LOC_Os02g21430.1 RRM 280 345
LOC_Os02g21430.1 RRM 660 730

Links

Other RRM family RBPs
Other Oryza sativa RBPs

59 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28350.m000106 Ricinus communis 28350.m000106 N 0.789
29693.m002077 Ricinus communis 29693.m002077 N 0.809
30147.m014409 Ricinus communis 30147.m014409 N 0.760
B9GMT5_POPTR Populus trichocarpa POPTR_0001s13030 N 0.722
B9GT36_POPTR Populus trichocarpa POPTR_0002s06070 N 0.809
B9GZ23_POPTR Populus trichocarpa POPTR_0003s16110 N 0.701
B9H813_POPTR Populus trichocarpa POPTR_0005s22370 N 0.804
B9I403_POPTR Populus trichocarpa POPTR_0012s10900 N 0.711
BGIOSIBCE006715 Oryza indica BGIOSIBCE006715 N 1.000
BGIOSIBCE007174 Oryza indica BGIOSIBCE007174 N 0.721
BGIOSIBCE008451 Oryza indica BGIOSIBCE008451 N 0.805
BRADI1G52280 Brachypodium distachyon BRADI1G52280 N 0.824
BRADI3G10967 Brachypodium distachyon BRADI3G10967 N 0.922
BRADI3G44380 Brachypodium distachyon BRADI3G44380 N 0.730
cassava12910.valid.m1 Manihot esculenta cassava12910.valid.m1 N 0.735
cassava42352.valid.m1 Manihot esculenta cassava42352.valid.m1 N 0.804
cassava42353.valid.m1 Manihot esculenta cassava42353.valid.m1 N 0.804
cassava42354.valid.m1 Manihot esculenta cassava42354.valid.m1 N 0.804
cassava42355.valid.m1 Manihot esculenta cassava42355.valid.m1 N 0.804
cassava44897.m1 Manihot esculenta cassava44897.m1 N 0.804
cassava6429.valid.m1 Manihot esculenta cassava6429.valid.m1 N 0.804
chr6.CM0037.1500.nc Lotus japonicus chr6.CM0037.1500.nc N 0.793
Cucsa.047430 Cucumis sativus Cucsa.047430 N 0.779
Cucsa.185450 Cucumis sativus Cucsa.185450 N 0.780
Cucsa.349210 Cucumis sativus Cucsa.349210 N 0.775
estExt_fgenesh2_pg.C_120305 Selaginella moellendorfii estExt_fgenesh2_pg.C_120305 N 0.773
estExt_gwp_gw1.C_780034 Physcomitrella patens estExt_gwp_gw1.C_780034 N 0.789
e_gw1.12.24.1 Selaginella moellendorfii e_gw1.12.24.1 N 0.765
e_gw1.271.39.1 Physcomitrella patens e_gw1.271.39.1 N 0.789
e_gw1.78.82.1 Physcomitrella patens e_gw1.78.82.1 N 0.789
Glyma08g01040.1 Glycine max Glyma08g01040.1 N 0.701
Glyma08g42230.1 Glycine max Glyma08g42230.1 N 0.804
Glyma09g11630.1 Glycine max Glyma09g11630.1 N 0.793
Glyma15g23420.1 Glycine max Glyma15g23420.1 N 0.809
Glyma18g12730.1 Glycine max Glyma18g12730.1 N 0.804
GRMZM2G004455 Zea mays GRMZM2G004455 N 0.824
GRMZM2G154229 Zea mays GRMZM2G154229 N 0.824
GSVIVG00001086001 Vitis vinifera GSVIVG00001086001 N 0.779
GSVIVG00008646001 Vitis vinifera GSVIVG00008646001 N 0.784
GSVIVG00021379001 Vitis vinifera GSVIVG00021379001 N 0.804
LOC_Os02g31290 Oryza sativa LOC_Os02g31290 N 0.721
LOC_Os02g48790 Oryza sativa LOC_Os02g48790 N 0.805
Medtr2g056620 Medicago truncatula Medtr2g056620 N 0.798
mgf000415m Mimulus guttatus mgf000415m N 0.755
mgf005765m Mimulus guttatus mgf005765m N 0.790
mgf014747m Mimulus guttatus mgf014747m N 0.785
mgf015667m Mimulus guttatus mgf015667m N 0.755
mgf023970m Mimulus guttatus mgf023970m N 0.743
ML5 Arabidopsis thaliana AT1G29400-TAIR-G N 0.735
PK15886.1 Cannabis sativa PK15886.1 N 0.750
PK24656.1 Cannabis sativa PK24656.1 N 0.789
PK25465.1 Cannabis sativa PK25465.1 N 0.799
ppa000845m Prunus persica ppa000845m N 0.750
ppa000997m Prunus persica ppa000997m N 0.760
ppa001307m Prunus persica ppa001307m N 0.789
ppa001327m Prunus persica ppa001327m N 0.799
SB04G021130 Sorghum bicolor Sb04g021130 N 0.717
SB10G000350 Sorghum bicolor Sb10g000350 N 0.828
XM_002893514.1 Arabidopsis lyrata Al_scaffold_0001_2998 N 0.730