Cucsa.185450 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.185450 T49581_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.185450.1 RRM 193 258
Cucsa.185450.1 RRM 278 343
Cucsa.185450.1 RRM 690 762
Cucsa.185450.2 RRM 193 258
Cucsa.185450.2 RRM 278 343
Cucsa.185450.2 RRM 690 762
Cucsa.185450.3 RRM 193 258
Cucsa.185450.3 RRM 278 343
Cucsa.185450.3 RRM 690 762
Cucsa.185450.4 RRM 193 258
Cucsa.185450.4 RRM 278 343
Cucsa.185450.5 RRM 48 113
Cucsa.185450.5 RRM 460 532

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

84 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00000782001 Vitis vinifera GSVIVG00000782001 N 0.970
ppa001327m Prunus persica ppa001327m N 0.956
cassava6430.valid.m1 Manihot esculenta cassava6430.valid.m1 N 0.947
cassava6431.valid.m1 Manihot esculenta cassava6431.valid.m1 N 0.947
B9H813_POPTR Populus trichocarpa POPTR_0005s22370 N 0.946
Glyma18g12730.1 Glycine max Glyma18g12730.1 N 0.941
28350.m000106 Ricinus communis 28350.m000106 N 0.941
PK25465.1 Cannabis sativa PK25465.1 N 0.941
cassava42355.valid.m1 Manihot esculenta cassava42355.valid.m1 N 0.937
GSVIVG00021379001 Vitis vinifera GSVIVG00021379001 N 0.937
cassava42353.valid.m1 Manihot esculenta cassava42353.valid.m1 N 0.937
B9GT36_POPTR Populus trichocarpa POPTR_0002s06070 N 0.937
cassava42352.valid.m1 Manihot esculenta cassava42352.valid.m1 N 0.937
cassava44897.m1 Manihot esculenta cassava44897.m1 N 0.937
cassava42354.valid.m1 Manihot esculenta cassava42354.valid.m1 N 0.937
Glyma15g23420.1 Glycine max Glyma15g23420.1 N 0.937
cassava6429.valid.m1 Manihot esculenta cassava6429.valid.m1 N 0.937
Glyma08g42230.1 Glycine max Glyma08g42230.1 N 0.937
Glyma09g11630.1 Glycine max Glyma09g11630.1 N 0.932
mgf014747m Mimulus guttatus mgf014747m N 0.927
PDK_20s1502541g003 Phoenix dactylifera PDK_20s1502541g003 N 0.924
e_gw1.271.39.1 Physcomitrella patens e_gw1.271.39.1 N 0.922
ppa001307m Prunus persica ppa001307m N 0.922
mgf005765m Mimulus guttatus mgf005765m N 0.922
estExt_gwp_gw1.C_780034 Physcomitrella patens estExt_gwp_gw1.C_780034 N 0.917
e_gw1.78.82.1 Physcomitrella patens e_gw1.78.82.1 N 0.917
Medtr2g056620 Medicago truncatula Medtr2g056620 N 0.917
PK24656.1 Cannabis sativa PK24656.1 N 0.917
chr6.CM0037.1500.nc Lotus japonicus chr6.CM0037.1500.nc N 0.917
PDK_20s1383501g002 Phoenix dactylifera PDK_20s1383501g002 N 0.917
29693.m002077 Ricinus communis 29693.m002077 N 0.907
GSVIVG00008646001 Vitis vinifera GSVIVG00008646001 N 0.902
Cucsa.047430 Cucumis sativus Cucsa.047430 N 0.902
estExt_fgenesh2_pg.C_120305 Selaginella moellendorfii estExt_fgenesh2_pg.C_120305 N 0.898
e_gw1.12.24.1 Selaginella moellendorfii e_gw1.12.24.1 N 0.893
GSVIVG00001086001 Vitis vinifera GSVIVG00001086001 N 0.888
GRMZM2G004455 Zea mays GRMZM2G004455 N 0.878
Cucsa.349210 Cucumis sativus Cucsa.349210 N 0.873
SB10G000350 Sorghum bicolor Sb10g000350 N 0.873
GRMZM2G154229 Zea mays GRMZM2G154229 N 0.873
ML5 Arabidopsis thaliana AT1G29400-TAIR-G N 0.868
30147.m014409 Ricinus communis 30147.m014409 N 0.863
BRADI1G52280 Brachypodium distachyon BRADI1G52280 N 0.863
XM_002893514.1 Arabidopsis lyrata Al_scaffold_0001_2998 N 0.863
BGIOSIBCE008451 Oryza indica BGIOSIBCE008451 N 0.859
LOC_Os02g48790 Oryza sativa LOC_Os02g48790 N 0.859
mgf023970m Mimulus guttatus mgf023970m N 0.858
PK15886.1 Cannabis sativa PK15886.1 N 0.854
mgf000415m Mimulus guttatus mgf000415m N 0.854
mgf015667m Mimulus guttatus mgf015667m N 0.854
B9GMT5_POPTR Populus trichocarpa POPTR_0001s13030 N 0.849
ppa000845m Prunus persica ppa000845m N 0.849
B9GZ23_POPTR Populus trichocarpa POPTR_0003s16110 N 0.834
BRADI3G44380 Brachypodium distachyon BRADI3G44380 N 0.834
ppa000997m Prunus persica ppa000997m N 0.834
MDP0000276328 Malus x domestica MDP0000276328 N 0.833
cassava12910.valid.m1 Manihot esculenta cassava12910.valid.m1 N 0.829
B9IFK9_POPTR Populus trichocarpa POPTR_0015s11730 N 0.820
MDP0000130792 Malus x domestica MDP0000130792 N 0.818
SB04G021130 Sorghum bicolor Sb04g021130 N 0.815
B9I403_POPTR Populus trichocarpa POPTR_0012s10900 N 0.815
30128.m008555 Ricinus communis 30128.m008555 N 0.811
BGIOSIBCE007174 Oryza indica BGIOSIBCE007174 N 0.810
LOC_Os02g31290 Oryza sativa LOC_Os02g31290 N 0.810
MDP0000235584 Malus x domestica MDP0000235584 N 0.803
BRADI3G10967 Brachypodium distachyon BRADI3G10967 N 0.800
GRMZM2G012302 Zea mays GRMZM2G012302 N 0.795
PK19379.1 Cannabis sativa PK19379.1 N 0.790
cassava13647.valid.m1 Manihot esculenta cassava13647.valid.m1 N 0.785
cassava13648.valid.m1 Manihot esculenta cassava13648.valid.m1 N 0.785
BGIOSIBCE006715 Oryza indica BGIOSIBCE006715 N 0.780
Glyma08g01040.1 Glycine max Glyma08g01040.1 N 0.780
LOC_Os02g21430 Oryza sativa LOC_Os02g21430 N 0.780
XM_002870025.1 Arabidopsis lyrata fgenesh2_kg.7__2489__AT4G18120.1 N 0.766
cassava37261.valid.m1 Manihot esculenta cassava37261.valid.m1 N 0.766
cassava37262.valid.m1 Manihot esculenta cassava37262.valid.m1 N 0.766
Medtr4g152330 Medicago truncatula Medtr4g152330 N 0.758
Medtr3g151260 Medicago truncatula Medtr3g151260 N 0.751
Glyma06g17250.1 Glycine max Glyma06g17250.1 N 0.735
ML2 Arabidopsis thaliana AT2G42890-TAIR-G N 0.732
BRADI5G08580 Brachypodium distachyon BRADI5G08580 N 0.732
Glyma04g37810.1 Glycine max Glyma04g37810.1 N 0.727
GRMZM2G451716 Zea mays GRMZM2G451716 N 0.712