Medtr2g056620 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr2g056620 T54451_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr2g056620.1 RRM 198 263
Medtr2g056620.1 RRM 283 348
Medtr2g056620.1 RRM 702 772
Medtr2g056620.2 RRM 97 162
Medtr2g056620.2 RRM 182 247
Medtr2g056620.2 RRM 601 671

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava42352.valid.m1 Manihot esculenta cassava42352.valid.m1 N 0.971
cassava44897.m1 Manihot esculenta cassava44897.m1 N 0.971
cassava42353.valid.m1 Manihot esculenta cassava42353.valid.m1 N 0.971
cassava42355.valid.m1 Manihot esculenta cassava42355.valid.m1 N 0.971
cassava42354.valid.m1 Manihot esculenta cassava42354.valid.m1 N 0.971
chr6.CM0037.1500.nc Lotus japonicus chr6.CM0037.1500.nc N 0.970
Glyma15g23420.1 Glycine max Glyma15g23420.1 N 0.966
cassava6429.valid.m1 Manihot esculenta cassava6429.valid.m1 N 0.961
ppa001307m Prunus persica ppa001307m N 0.956
Glyma09g11630.1 Glycine max Glyma09g11630.1 N 0.956
Glyma18g12730.1 Glycine max Glyma18g12730.1 N 0.941
GSVIVG00021379001 Vitis vinifera GSVIVG00021379001 N 0.941
Glyma08g42230.1 Glycine max Glyma08g42230.1 N 0.936
ppa001327m Prunus persica ppa001327m N 0.936
29693.m002077 Ricinus communis 29693.m002077 N 0.936
PK24656.1 Cannabis sativa PK24656.1 N 0.926
Cucsa.185450 Cucumis sativus Cucsa.185450 N 0.917
PK25465.1 Cannabis sativa PK25465.1 N 0.912
Cucsa.047430 Cucumis sativus Cucsa.047430 N 0.912
28350.m000106 Ricinus communis 28350.m000106 N 0.907
B9H813_POPTR Populus trichocarpa POPTR_0005s22370 N 0.907
mgf005765m Mimulus guttatus mgf005765m N 0.902
B9GT36_POPTR Populus trichocarpa POPTR_0002s06070 N 0.902
mgf014747m Mimulus guttatus mgf014747m N 0.898
e_gw1.271.39.1 Physcomitrella patens e_gw1.271.39.1 N 0.897
e_gw1.78.82.1 Physcomitrella patens e_gw1.78.82.1 N 0.892
estExt_gwp_gw1.C_780034 Physcomitrella patens estExt_gwp_gw1.C_780034 N 0.892
SB10G000350 Sorghum bicolor Sb10g000350 N 0.882
GSVIVG00008646001 Vitis vinifera GSVIVG00008646001 N 0.877
GRMZM2G004455 Zea mays GRMZM2G004455 N 0.877
GRMZM2G154229 Zea mays GRMZM2G154229 N 0.873
BRADI1G52280 Brachypodium distachyon BRADI1G52280 N 0.873
estExt_fgenesh2_pg.C_120305 Selaginella moellendorfii estExt_fgenesh2_pg.C_120305 N 0.872
BGIOSIBCE008451 Oryza indica BGIOSIBCE008451 N 0.863
LOC_Os02g48790 Oryza sativa LOC_Os02g48790 N 0.863
Cucsa.349210 Cucumis sativus Cucsa.349210 N 0.863
ML5 Arabidopsis thaliana AT1G29400-TAIR-G N 0.863
GSVIVG00001086001 Vitis vinifera GSVIVG00001086001 N 0.863
e_gw1.12.24.1 Selaginella moellendorfii e_gw1.12.24.1 N 0.863
XM_002893514.1 Arabidopsis lyrata Al_scaffold_0001_2998 N 0.858
mgf023970m Mimulus guttatus mgf023970m N 0.853
30147.m014409 Ricinus communis 30147.m014409 N 0.848
mgf015667m Mimulus guttatus mgf015667m N 0.838
mgf000415m Mimulus guttatus mgf000415m N 0.838
PK15886.1 Cannabis sativa PK15886.1 N 0.833
ppa000845m Prunus persica ppa000845m N 0.833
BRADI3G44380 Brachypodium distachyon BRADI3G44380 N 0.824
B9GMT5_POPTR Populus trichocarpa POPTR_0001s13030 N 0.820
cassava12910.valid.m1 Manihot esculenta cassava12910.valid.m1 N 0.819
SB04G021130 Sorghum bicolor Sb04g021130 N 0.810
B9GZ23_POPTR Populus trichocarpa POPTR_0003s16110 N 0.804
LOC_Os02g31290 Oryza sativa LOC_Os02g31290 N 0.799
BGIOSIBCE007174 Oryza indica BGIOSIBCE007174 N 0.799
BRADI3G10967 Brachypodium distachyon BRADI3G10967 N 0.799
LOC_Os02g21430 Oryza sativa LOC_Os02g21430 N 0.798
BGIOSIBCE006715 Oryza indica BGIOSIBCE006715 N 0.798
ppa000997m Prunus persica ppa000997m N 0.794
B9I403_POPTR Populus trichocarpa POPTR_0012s10900 N 0.794
GRMZM2G012302 Zea mays GRMZM2G012302 N 0.785
cassava13648.valid.m1 Manihot esculenta cassava13648.valid.m1 N 0.775
cassava13647.valid.m1 Manihot esculenta cassava13647.valid.m1 N 0.775
PK19379.1 Cannabis sativa PK19379.1 N 0.770
Glyma08g01040.1 Glycine max Glyma08g01040.1 N 0.760
XM_002870025.1 Arabidopsis lyrata fgenesh2_kg.7__2489__AT4G18120.1 N 0.755
cassava37261.valid.m1 Manihot esculenta cassava37261.valid.m1 N 0.750
cassava37262.valid.m1 Manihot esculenta cassava37262.valid.m1 N 0.750
ML2 Arabidopsis thaliana AT2G42890-TAIR-G N 0.739
BRADI5G08580 Brachypodium distachyon BRADI5G08580 N 0.739
Medtr3g151260 Medicago truncatula Medtr3g151260 N 0.725
GRMZM2G451716 Zea mays GRMZM2G451716 N 0.714
SB06G014670 Sorghum bicolor Sb06g014670 N 0.704