B9GZ23_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0003s16110 T45490_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s16110.1 RRM 280 345
POPTR_0003s16110.1 RRM 365 430
POPTR_0003s16110.1 RRM 813 876

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

66 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9GMT5_POPTR Populus trichocarpa POPTR_0001s13030 N 0.878
GSVIVG00001086001 Vitis vinifera GSVIVG00001086001 N 0.853
cassava12910.valid.m1 Manihot esculenta cassava12910.valid.m1 N 0.848
GSVIVG00008646001 Vitis vinifera GSVIVG00008646001 N 0.843
Cucsa.349210 Cucumis sativus Cucsa.349210 N 0.843
ppa000845m Prunus persica ppa000845m N 0.838
Cucsa.185450 Cucumis sativus Cucsa.185450 N 0.834
ppa001327m Prunus persica ppa001327m N 0.828
Glyma18g12730.1 Glycine max Glyma18g12730.1 N 0.828
PK15886.1 Cannabis sativa PK15886.1 N 0.828
GSVIVG00021379001 Vitis vinifera GSVIVG00021379001 N 0.828
cassava44897.m1 Manihot esculenta cassava44897.m1 N 0.824
B9H813_POPTR Populus trichocarpa POPTR_0005s22370 N 0.824
cassava42355.valid.m1 Manihot esculenta cassava42355.valid.m1 N 0.824
cassava42352.valid.m1 Manihot esculenta cassava42352.valid.m1 N 0.824
Glyma08g42230.1 Glycine max Glyma08g42230.1 N 0.824
cassava42353.valid.m1 Manihot esculenta cassava42353.valid.m1 N 0.824
cassava42354.valid.m1 Manihot esculenta cassava42354.valid.m1 N 0.824
cassava6429.valid.m1 Manihot esculenta cassava6429.valid.m1 N 0.819
Glyma15g23420.1 Glycine max Glyma15g23420.1 N 0.819
B9GT36_POPTR Populus trichocarpa POPTR_0002s06070 N 0.819
PK25465.1 Cannabis sativa PK25465.1 N 0.819
estExt_gwp_gw1.C_780034 Physcomitrella patens estExt_gwp_gw1.C_780034 N 0.814
e_gw1.78.82.1 Physcomitrella patens e_gw1.78.82.1 N 0.814
ppa001307m Prunus persica ppa001307m N 0.814
chr6.CM0037.1500.nc Lotus japonicus chr6.CM0037.1500.nc N 0.809
mgf000415m Mimulus guttatus mgf000415m N 0.809
mgf015667m Mimulus guttatus mgf015667m N 0.809
e_gw1.271.39.1 Physcomitrella patens e_gw1.271.39.1 N 0.809
28350.m000106 Ricinus communis 28350.m000106 N 0.809
SB10G000350 Sorghum bicolor Sb10g000350 N 0.809
e_gw1.12.24.1 Selaginella moellendorfii e_gw1.12.24.1 N 0.809
30147.m014409 Ricinus communis 30147.m014409 N 0.809
estExt_fgenesh2_pg.C_120305 Selaginella moellendorfii estExt_fgenesh2_pg.C_120305 N 0.809
PK24656.1 Cannabis sativa PK24656.1 N 0.809
mgf014747m Mimulus guttatus mgf014747m N 0.805
Glyma09g11630.1 Glycine max Glyma09g11630.1 N 0.804
XM_002893514.1 Arabidopsis lyrata Al_scaffold_0001_2998 N 0.804
Medtr2g056620 Medicago truncatula Medtr2g056620 N 0.804
mgf005765m Mimulus guttatus mgf005765m N 0.800
GRMZM2G004455 Zea mays GRMZM2G004455 N 0.799
B9I403_POPTR Populus trichocarpa POPTR_0012s10900 N 0.799
ML5 Arabidopsis thaliana AT1G29400-TAIR-G N 0.799
GRMZM2G154229 Zea mays GRMZM2G154229 N 0.799
29693.m002077 Ricinus communis 29693.m002077 N 0.794
BRADI1G52280 Brachypodium distachyon BRADI1G52280 N 0.794
cassava13648.valid.m1 Manihot esculenta cassava13648.valid.m1 N 0.789
cassava13647.valid.m1 Manihot esculenta cassava13647.valid.m1 N 0.789
Cucsa.047430 Cucumis sativus Cucsa.047430 N 0.789
BGIOSIBCE008451 Oryza indica BGIOSIBCE008451 N 0.780
LOC_Os02g48790 Oryza sativa LOC_Os02g48790 N 0.780
BRADI3G44380 Brachypodium distachyon BRADI3G44380 N 0.779
Glyma08g01040.1 Glycine max Glyma08g01040.1 N 0.779
ppa000997m Prunus persica ppa000997m N 0.765
PK19379.1 Cannabis sativa PK19379.1 N 0.760
LOC_Os02g31290 Oryza sativa LOC_Os02g31290 N 0.755
BGIOSIBCE007174 Oryza indica BGIOSIBCE007174 N 0.755
SB04G021130 Sorghum bicolor Sb04g021130 N 0.751
Medtr3g151260 Medicago truncatula Medtr3g151260 N 0.740
mgf023970m Mimulus guttatus mgf023970m N 0.739
GRMZM2G012302 Zea mays GRMZM2G012302 N 0.732
BRADI3G10967 Brachypodium distachyon BRADI3G10967 N 0.725
BGIOSIBCE006715 Oryza indica BGIOSIBCE006715 N 0.701
cassava37262.valid.m1 Manihot esculenta cassava37262.valid.m1 N 0.701
cassava37261.valid.m1 Manihot esculenta cassava37261.valid.m1 N 0.701
LOC_Os02g21430 Oryza sativa LOC_Os02g21430 N 0.701