B9IPA5_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0019s03570 T45706_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		0.761
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.746
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0019s03570.1 RRM 137 207
POPTR_0019s03570.2 RRM 138 187

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

82 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AGAP013044 Anopheles gambiae AGAP013044 N 0.000
amel4_ncbi_hmm9262 Apis mellifera amel4_ncbi_hmm9262 N 0.000
amel4_ncbi_hmm9262 Tribolium castaneum amel4_ncbi_hmm9262 N 0.000
Clp Drosophila melanogaster FBgn0015621 N 0.000
e_gw1.24.75.1 Daphnia pulex e_gw1.24.75.1 N 0.000
e_gw1.98.132.1 Lottia gigantea e_gw1.98.132.1 N 0.000
GA17582-RA Drosophila pseudoobscura FBgn0077593 N 0.000
ISCW021476 Ixodes scapularis ISCW021476 N 0.000