CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
B9IPA5_POPTR
(
Populus trichocarpa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
POPTR_0019s03570
T45706_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RBM42
M142_0.6
Homo sapiens
AACUAMG
RNAcompete
Ray et al.(2013)
RNCMPT00151
0.761
ENSXETG00000017599
M237_0.6
Xenopus tropicalis
WACUAC
RNAcompete
Ray et al.(2013)
RNCMPT00282
0.746
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0019s03570.1
RRM
137
207
VFCGDLGNEVNDDVLSKAFSRFPSFNLARVVRDKRTGKTKGYGFVSFANPTDLAAALKEMNGKYVGNRPIK
POPTR_0019s03570.2
RRM
138
187
FCGDLGNEVVRDKRTGKTKGYGFVSFANPTDLAAALKEMNGKYVGNRPIK
Links
Other
RRM
family RBPs
Other
Populus trichocarpa
RBPs
82 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AGAP013044
Anopheles gambiae
AGAP013044
N
0.000
amel4_ncbi_hmm9262
Apis mellifera
amel4_ncbi_hmm9262
N
0.000
amel4_ncbi_hmm9262
Tribolium castaneum
amel4_ncbi_hmm9262
N
0.000
Clp
Drosophila melanogaster
FBgn0015621
N
0.000
e_gw1.24.75.1
Daphnia pulex
e_gw1.24.75.1
N
0.000
e_gw1.98.132.1
Lottia gigantea
e_gw1.98.132.1
N
0.000
GA17582-RA
Drosophila pseudoobscura
FBgn0077593
N
0.000
ISCW021476
Ixodes scapularis
ISCW021476
N
0.000