B9IPA5_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0019s03570 T45706_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		0.761
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.746
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0019s03570.1 RRM 137 207
POPTR_0019s03570.2 RRM 138 187

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

82 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29680.m001693 Ricinus communis 29680.m001693 I 0.944
A2VDB3 Xenopus laevis A2VDB3 I 0.746
AAI29698 Xenopus laevis AAI29698 I 0.746
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 0.761
AT3G04500 Arabidopsis thaliana AT3G04500-TAIR-G I 0.887
B9I5N8_POPTR Populus trichocarpa POPTR_0013s04390 I 0.986
BGIOSIBCE007866 Oryza indica BGIOSIBCE007866 I 0.859
BGIOSIBCE028936 Oryza indica BGIOSIBCE028936 I 0.930
BRADI3G12840 Brachypodium distachyon BRADI3G12840 I 0.930
BRADI3G49130 Brachypodium distachyon BRADI3G49130 I 0.873
cassava22669.valid.m1 Manihot esculenta cassava22669.valid.m1 I 0.944
cassava22670.valid.m1 Manihot esculenta cassava22670.valid.m1 N 0.792
chr5.LjT18P14.100.nd Lotus japonicus chr5.LjT18P14.100.nd N 0.806
Cucsa.178480 Cucumis sativus Cucsa.178480 I 0.944
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 0.761
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 0.761
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.746
estExt_fgenesh2_pg.C_360096 Branchiostoma floridae estExt_fgenesh2_pg.C_360096 I 0.732
estExt_fgenesh2_pg.C_7640002 Branchiostoma floridae estExt_fgenesh2_pg.C_7640002 I 0.732
e_gw1.156.67.1 Physcomitrella patens e_gw1.156.67.1 I 0.873
Glyma10g30900.1 Glycine max Glyma10g30900.1 I 0.944
Glyma11g01300.1 Glycine max Glyma11g01300.1 I 0.944
Glyma20g36570.1 Glycine max Glyma20g36570.1 I 0.972
GRMZM2G068255 Zea mays GRMZM2G068255 I 0.944
GRMZM2G125529 Zea mays GRMZM2G125529 I 0.817
GSVIVG00016104001 Vitis vinifera GSVIVG00016104001 I 0.915
GSVIVG00023509001 Vitis vinifera GSVIVG00023509001 I 0.915
gw1.0.1780.1 Selaginella moellendorfii gw1.0.1780.1 I 0.819
LjSGA_021949.1 Lotus japonicus LjSGA_021949.1 I 0.901
LOC100051102 Equus caballus ENSECAG00000018215 I 0.761
LOC_Os02g40900 Oryza sativa LOC_Os02g40900 I 0.845
LOC_Os08g45240 Oryza sativa LOC_Os08g45240 I 0.930
MDP0000283678 Malus x domestica MDP0000283678 I 0.930
MDP0000320908 Malus x domestica MDP0000320908 I 0.930
Medtr1g093610 Medicago truncatula Medtr1g093610 I 0.930
mgf008981m Mimulus guttatus mgf008981m I 0.778
mgf018525m Mimulus guttatus mgf018525m I 0.803
mgf021739m Mimulus guttatus mgf021739m I 0.958
NCLIV_021850 Neospora caninum NCLIV_021850 N 0.732
PDK_20s1301681g005 Phoenix dactylifera PDK_20s1301681g005 I 0.930
PDK_20s1323974g003 Phoenix dactylifera PDK_20s1323974g003 I 0.915
PDK_20s1329112g001 Phoenix dactylifera PDK_20s1329112g001 N 0.803
PK16312.1 Cannabis sativa PK16312.1 I 0.958
ppa010477m Prunus persica ppa010477m I 0.930
RBM42 Callithrix jacchus ENSCJAG00000010220 I 0.761
RBM42 Otolemur garnettii ENSOGAG00000004144 I 0.761
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 0.761
Rbm42 Mus musculus ENSMUSG00000036733 I 0.761
RBM42 Monodelphis domestica ENSMODG00000013957 I 0.761
RBM42 Macaca mulatta ENSMMUG00000018954 I 0.761
RBM42 Myotis lucifugus ENSMLUG00000011334 I 0.761
RBM42 Loxodonta africana ENSLAFG00000014993 N 0.704
RBM42 Gorilla gorilla ENSGGOG00000009972 I 0.761
RBM42 Gasterosteus aculeatus ENSGACG00000004170 I 0.761
RBM42 Homo sapiens ENSG00000126254 D 0.761
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 0.761
rbm42 Danio rerio ENSDARG00000039910 I 0.746
RBM42 Cavia porcellus ENSCPOG00000012365 I 0.761
RBM42 Canis familiaris ENSCAFG00000006925 I 0.761
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.746
RBM42 Ochotona princeps ENSOPRG00000001229 I 0.761
RBM42 Oryzias latipes ENSORLG00000003387 I 0.761
RBM42 Tarsius syrichta ENSTSYG00000014688 I 0.761
RBM42 Takifugu rubripes ENSTRUG00000004663 I 0.761
RBM42 Tetraodon nigroviridis ENSTNIG00000011669 I 0.761
RBM42 Microcebus murinus ENSMICG00000009880 I 0.761
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 0.761
RBM42 Sus scrofa ENSSSCG00000002905 I 0.761
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 0.761
RBM42 Sorex araneus ENSSARG00000010724 I 0.761
RBM42 Procavia capensis ENSPCAG00000013053 I 0.761
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 0.761
RBM42 Pan troglodytes ENSPTRG00000010852 I 0.761
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 0.761
Sb02g038420 Sorghum bicolor Sb02g038420 I 0.944
SB04G026430 Sorghum bicolor Sb04g026430 I 0.817
SPPG_03010 Spizellomyces punctatus SPPG_03010 I 0.732
TGGT1_017860 Toxoplasma gondii TGGT1_017860 N 0.732
TGME49_003080 Toxoplasma gondii TGME49_003080 N 0.732
TGVEG_046310 Toxoplasma gondii TGVEG_046310 N 0.732
XM_002884402.1 Arabidopsis lyrata fgenesh2_kg.3__407__AT3G04500.1 I 0.887