PPA11675 (Pristionchus pacificus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PPA11675 T45775_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.700
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
PPA11675 RRM 80 149

Links

Other RRM family RBPs
Other Pristionchus pacificus RBPs

21 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R017990 Ailuropoda melanoleuca Ame_R017990 N 0.000
AT1G36800 Arabidopsis thaliana AT1G36800-TAIR-G N 0.000
BC1G_09586 Botrytis cinerea BC1G_09586 N 0.000
ECU09_0340 Encephalitozoon cuniculi ECU09_0340 N 0.000
Ein09_0330 Encephalitozoon intestinalis Ein09_0330 N 0.000
ENSDORG00000010285 Dipodomys ordii ENSDORG00000010285 N 0.000
ENSMODG00000016318 Monodelphis domestica ENSMODG00000016318 N 0.000
ENSMODG00000024432 Monodelphis domestica ENSMODG00000024432 N 0.000
ENSMODG00000024434 Monodelphis domestica ENSMODG00000024434 N 0.000
ENSMODG00000024435 Monodelphis domestica ENSMODG00000024435 N 0.000
ENSORLG00000008630 Oryzias latipes ENSORLG00000008630 N 0.000
ENSPPYG00000007201 Pongo pygmaeus ENSPPYG00000007201 N 0.000
ENSTNIG00000005451 Tetraodon nigroviridis ENSTNIG00000005451 N 0.000
ENSTRUG00000009471 Takifugu rubripes ENSTRUG00000009471 N 0.000
e_gw.4.464.1 Branchiostoma floridae e_gw.4.464.1 N 0.000
fgenesh1_pg.C_scaffold_47000011 Phytophthora ramorum fgenesh1_pg.C_scaffold_47000011 N 0.000
LOC100395616 Callithrix jacchus ENSCJAG00000020661 N 0.000
PITG_10087 Phytophthora infestans PITG_10087 N 0.000
Q866R2_HORSE Equus caballus ENSECAG00000014572 N 0.000
RBBP6 Myotis lucifugus ENSMLUG00000010601 N 0.000
RBBP6 Pan troglodytes ENSPTRG00000007897 N 0.000
RBBP6 Pteropus vampyrus ENSPVAG00000001110 N 0.000
Rbbp6 Rattus norvegicus ENSRNOG00000012806 N 0.000
RBBP6 Tetraodon nigroviridis ENSTNIG00000011614 N 0.000
RBBP6 Vicugna pacos ENSVPAG00000006458 N 0.000
RBBP6 Sorex araneus ENSSARG00000004977 N 0.000
RBBP6 Tursiops truncatus ENSTTRG00000002696 N 0.000
RBBP6 Sus scrofa ENSSSCG00000007830 N 0.000
RBBP6 Spermophilus tridecemlineatus ENSSTOG00000016006 N 0.000
RBBP6 Tarsius syrichta ENSTSYG00000000822 N 0.000
RBBP6 Takifugu rubripes ENSTRUG00000010008 N 0.000
RBBP6 Taeniopygia guttata ENSTGUG00000006185 N 0.000
RBBP6 Oryzias latipes ENSORLG00000012764 N 0.000
RBBP6 Ochotona princeps ENSOPRG00000016272 N 0.000
RBBP6 Gasterosteus aculeatus ENSGACG00000016781 N 0.000
RBBP6 Homo sapiens ENSG00000122257 N 0.000
RBBP6 Erinaceus europaeus ENSEEUG00000001683 N 0.000
RBBP6 Dasypus novemcinctus ENSDNOG00000015497 N 0.000
RBBP6 Choloepus hoffmanni ENSCHOG00000000278 N 0.000
RBBP6 Canis familiaris ENSCAFG00000017566 N 0.000
RBBP6 Bos taurus ENSBTAG00000009441 N 0.000
RBBP6 Anolis carolinensis ENSACAG00000011794 N 0.000
RBBP6 Gallus gallus ENSGALG00000006043 N 0.000
RBBP6 Gorilla gorilla ENSGGOG00000007137 N 0.000
RBBP6 Oryctolagus cuniculus ENSOCUG00000004346 N 0.000
RBBP6 Ornithorhynchus anatinus ENSOANG00000007673 N 0.000
Rbbp6 Mus musculus ENSMUSG00000030779 N 0.000
RBBP6 Macaca mulatta ENSMMUG00000015908 N 0.000
RBBP6 Microcebus murinus ENSMICG00000008059 N 0.000
RBBP6 Meleagris gallopavo ENSMGAG00000006423 N 0.000
RBBP6 Macropus eugenii ENSMEUG00000014491 N 0.000
RBBP6 Loxodonta africana ENSLAFG00000009528 N 0.000
s_441997 Phytophthora sojae s_441997 N 0.000
UM00321 Ustilago maydis UM00321 N 0.000
XP_002162513.1 Hydra magnipapillata XP_002162513.1 N 0.000