fgenesh1_pg.C_scaffold_47000011 (Phytophthora ramorum)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh1_pg.C_scaffold_47000011 T13977_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_47000011 CCHC ZF 252 268

Links

Other CCHC ZF family RBPs
Other Phytophthora ramorum RBPs

93 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
s_441997 Phytophthora sojae s_441997 N 1.000
PITG_10087 Phytophthora infestans PITG_10087 N 1.000
Rbbp6 Mus musculus ENSMUSG00000030779 N 0.765
ENSMODG00000024435 Monodelphis domestica ENSMODG00000024435 N 0.765
ENSMODG00000024434 Monodelphis domestica ENSMODG00000024434 N 0.765
ENSMODG00000024432 Monodelphis domestica ENSMODG00000024432 N 0.765
RBBP6 Ornithorhynchus anatinus ENSOANG00000007673 N 0.765
ENSPPYG00000007201 Pongo pygmaeus ENSPPYG00000007201 N 0.765
RBBP6 Ochotona princeps ENSOPRG00000016272 N 0.765
RBBP6 Oryctolagus cuniculus ENSOCUG00000004346 N 0.765
ENSMODG00000016318 Monodelphis domestica ENSMODG00000016318 N 0.765
RBBP6 Myotis lucifugus ENSMLUG00000010601 N 0.765
RBBP6 Gorilla gorilla ENSGGOG00000007137 N 0.765
RBBP6 Gallus gallus ENSGALG00000006043 N 0.765
RBBP6 Erinaceus europaeus ENSEEUG00000001683 N 0.765
Q866R2_HORSE Equus caballus ENSECAG00000014572 N 0.765
RBBP6 Loxodonta africana ENSLAFG00000009528 N 0.765
RBBP6 Macropus eugenii ENSMEUG00000014491 N 0.765
RBBP6 Pan troglodytes ENSPTRG00000007897 N 0.765
RBBP6 Microcebus murinus ENSMICG00000008059 N 0.765
RBBP6 Meleagris gallopavo ENSMGAG00000006423 N 0.765
RBBP6 Macaca mulatta ENSMMUG00000015908 N 0.765
RBBP6 Pteropus vampyrus ENSPVAG00000001110 N 0.765
e_gw1.311.2.1 Postia placenta e_gw1.311.2.1 N 0.765
e_gw1.147.34.1 Physcomitrella patens e_gw1.147.34.1 N 0.765
e_gw1.135.14.1 Postia placenta e_gw1.135.14.1 N 0.765
e_gw1.0.2594.1 Selaginella moellendorfii e_gw1.0.2594.1 N 0.765
e_gw1.84.86.1 Physcomitrella patens e_gw1.84.86.1 N 0.765
e_gwh2.3.362.1 Phanerochaete chrysosporium e_gwh2.3.362.1 N 0.765
eu2.Lbscf0002g03430 Laccaria bicolor eu2.Lbscf0002g03430 N 0.765
estExt_fgeneshMC_pg.C_60156 Mucor circinelloides estExt_fgeneshMC_pg.C_60156 N 0.765
estExt_fgenesh1_pg.C_90130 Micromonas pusilla estExt_fgenesh1_pg.C_90130 N 0.765
Ein09_0330 Encephalitozoon intestinalis Ein09_0330 N 0.765
ECU09_0340 Encephalitozoon cuniculi ECU09_0340 N 0.765
RBBP6 Sus scrofa ENSSSCG00000007830 N 0.765
RBBP6 Sorex araneus ENSSARG00000004977 N 0.765
Rbbp6 Rattus norvegicus ENSRNOG00000012806 N 0.765
RBBP6 Spermophilus tridecemlineatus ENSSTOG00000016006 N 0.765
RBBP6 Taeniopygia guttata ENSTGUG00000006185 N 0.765
RBBP6 Vicugna pacos ENSVPAG00000006458 N 0.765
RBBP6 Tursiops truncatus ENSTTRG00000002696 N 0.765
RBBP6 Tarsius syrichta ENSTSYG00000000822 N 0.765
ENSDORG00000010285 Dipodomys ordii ENSDORG00000010285 N 0.765
RBBP6 Homo sapiens ENSG00000122257 N 0.765
Genemark.8861_g Serpula lacrymans Genemark.8861_g N 0.765
AMAG_05802 Allomyces macrogynus AMAG_05802 N 0.765
RBBP6 Dasypus novemcinctus ENSDNOG00000015497 N 0.765
CC1G_00892 Coprinopsis cinerea CC1G_00892 N 0.765
fgeneshTM_pm.1_#_792 Tremella mesenterica fgeneshTM_pm.1_#_792 N 0.765
estExt_Genewise1.C_60832 Pleurotus ostreatus estExt_Genewise1.C_60832 N 0.765
fgeneshPB_pg.4__237 Phycomyces blakesleeanus fgeneshPB_pg.4__237 N 0.765
Ame_R017990 Ailuropoda melanoleuca Ame_R017990 N 0.765
estExt_fgenesh2_kg.C_60291 Agaricus bisporus estExt_fgenesh2_kg.C_60291 N 0.765
estExt_fgenesh2_pm.C_60269 Heterobasidion annosum estExt_fgenesh2_pm.C_60269 N 0.765
RO3G_12479 Rhizopus oryzae RO3G_12479 N 0.765
AMAG_12234 Allomyces macrogynus AMAG_12234 N 0.765
UM00321 Ustilago maydis UM00321 N 0.765
LOC100395616 Callithrix jacchus ENSCJAG00000020661 N 0.765
RBBP6 Canis familiaris ENSCAFG00000017566 N 0.765
RBBP6 Choloepus hoffmanni ENSCHOG00000000278 N 0.765
RBBP6 Bos taurus ENSBTAG00000009441 N 0.765
PredSwiss_CON1061.1 Pneumocystis carinii PredSwiss_CON1061.1 N 0.706
PredSwiss_CON2858.1 Pneumocystis carinii PredSwiss_CON2858.1 N 0.706
fgenesh1_pm.C_scaffold_1000464 Neurospora tetrasperma fgenesh1_pm.C_scaffold_1000464 N 0.706
RBBP6 Anolis carolinensis ENSACAG00000011794 N 0.706
estExt_fgenesh1_pg.C_130086 Sporobolomyces roseus estExt_fgenesh1_pg.C_130086 N 0.706
estExt_Genewise1.C_11798 Neurospora discreta estExt_Genewise1.C_11798 N 0.706
estExt_Genewise1Plus.C_22631 Thielavia terrestris estExt_Genewise1Plus.C_22631 N 0.706
rbbp6l Danio rerio ENSDARG00000037919 N 0.706
estExt_fgeneshTA2_pg.C_20820 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_20820 N 0.706
gw1.4.1338.1 Schizophyllum commune gw1.4.1338.1 N 0.706
PredSwiss_ASS2010_1894.1 Pneumocystis carinii PredSwiss_ASS2010_1894.1 N 0.706
estExt_fgenesh1_pm.C_120018 Mycosphaerella fijiensis estExt_fgenesh1_pm.C_120018 N 0.706
estExt_fgenesh1_pm.C_30270 Myceliophthora thermophila estExt_fgenesh1_pm.C_30270 N 0.706
SPBP8B7.15c Schizosaccharomyces pombe SPBP8B7.15c N 0.706
NCU06718 Neurospora crassa NCU06718 N 0.706
MGG_09536 Magnaporthe oryzae MGG_09536 N 0.706
MCYG_01387 Microsporum canis MCYG_01387 N 0.706
GLRG_03342 Colletotrichum graminicola GLRG_03342 N 0.706
MGYG_01930 Microsporum gypseum MGYG_01930 N 0.706
TESG_06028 Trichophyton tonsurans TESG_06028 N 0.706
TEQG_07175 Trichophyton equinum TEQG_07175 N 0.706
SS1G_05474 Sclerotinia sclerotiorum SS1G_05474 N 0.706
CNBG_0786 Cryptococcus neoformans CNBG_0786 N 0.706
CHGG_07192 Chaetomium globosum CHGG_07192 N 0.706
Pa_2_10770 Podospora anserina Pa_2_10770 N 0.706
KLLA0C12837g Kluyveromyces lactis KLLA0C12837g N 0.706
GSTUMT00011325001 Tuber melanosporum GSTUMT00011325001 N 0.706
XP_002162513.1 Hydra magnipapillata XP_002162513.1 N 0.706
VDBG_00415 Verticillium albo atrum VDBG_00415 N 0.706
BC1G_15234 Botrytis cinerea BC1G_15234 N 0.706
VDAG_00026 Verticillium dahliae VDAG_00026 N 0.706
TERG_04664 Trichophyton rubrum TERG_04664 N 0.706