PPA11675 (Pristionchus pacificus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PPA11675 T45775_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.700
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
PPA11675 RRM 80 149

Links

Other RRM family RBPs
Other Pristionchus pacificus RBPs

21 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw.21.136.1 Nematostella vectensis e_gw.21.136.1 I 0.786
CJA15148 Caenorhabditis japonica CJA15148 I 0.761
pabp-2 Caenorhabditis elegans C17E4.5 I 0.746
CBN16301 Caenorhabditis brenneri CBN16301 I 0.746
CBN00953 Caenorhabditis brenneri CBN00953 I 0.732
CBN10290 Caenorhabditis brenneri CBN10290 I 0.732
CRE07990 Caenorhabditis remanei CRE07990 I 0.732
CBG03741 Caenorhabditis briggsae CBG03741 I 0.732
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.732
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.729
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.718
pabpn1 Danio rerio ENSDARG00000045373 I 0.714
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.714
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.714
LOAG_03634 Loa loa LOAG_03634 I 0.714
Bm1_48895 Brugia malayi Bm1_48895 I 0.714
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.700
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.700
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.700
XP_799120.1 Strongylocentrotus purpuratus XP_799120.1 I 0.700
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.700