CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
Aqu1.218342
(
Amphimedon queenslandica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Aqu1.218342
T48987_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aqu1.218342
RRM
49
111
IYIGRLPYQAREKDVERFFRGFGRIRDINLKNGFGFVEFDDYRDAEDAVYELHGRELLGERVI
Aqu1.218342
RRM
159
224
ILVENVSSRVSWQDLKDFMRTAGEITYADAHKQKTGEGIVEYATYEDMKNAIRKLNGTDLNGRKIR
Links
Other
RRM
family RBPs
Other
Amphimedon queenslandica
RBPs
41 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GA18453-RA
Drosophila pseudoobscura
FBgn0078455
N
0.000
GA19155-RA
Drosophila pseudoobscura
FBgn0079152
N
0.000
GD11668
Drosophila simulans
FBgn0183408
N
0.000
GE14183
Drosophila yakuba
FBgn0231805
N
0.000
GF11890
Drosophila ananassae
FBgn0088930
N
0.000
GG22189
Drosophila erecta
FBgn0114363
N
0.000
GH21366
Drosophila grimshawi
FBgn0128828
N
0.000
GI20561
Drosophila mojavensis
FBgn0143297
N
0.000
GJ22415
Drosophila virilis
FBgn0209527
N
0.000
GK20819
Drosophila willistoni
FBgn0222815
N
0.000
GL11428
Drosophila persimilis
FBgn0149037
N
0.000
GM15910
Drosophila sechellia
FBgn0170826
N
0.000
qkr58E-2
Drosophila melanogaster
FBgn0022985
N
0.000